Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   CRM98_RS04730 Genome accession   NZ_CP023867
Coordinates   867268..867585 (+) Length   105 a.a.
NCBI ID   WP_002851255.1    Uniprot ID   Q0P8E2
Organism   Campylobacter jejuni strain FDAARGOS_422     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 862268..872585
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CRM98_RS04720 (CRM98_04720) - 862950..863591 (+) 642 WP_002851542.1 HAD family hydrolase -
  CRM98_RS04725 (CRM98_04725) nifJ 863684..867244 (+) 3561 WP_002851382.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  CRM98_RS04730 (CRM98_04730) ctsR 867268..867585 (+) 318 WP_002851255.1 hypothetical protein Machinery gene
  CRM98_RS04735 (CRM98_04735) ctsD 867557..868975 (+) 1419 WP_002851309.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  CRM98_RS04740 (CRM98_04740) ctsP 868968..869576 (+) 609 WP_002851464.1 ATP-binding protein Machinery gene
  CRM98_RS04745 (CRM98_04745) ctsX 869580..870167 (+) 588 WP_002851370.1 membrane protein Machinery gene
  CRM98_RS04750 (CRM98_04750) ctsE 870157..871716 (+) 1560 WP_002864463.1 GspE/PulE family protein Machinery gene

Sequence

Protein


Download         Length: 105 a.a.        Molecular weight: 12702.64 Da        Isoelectric Point: 5.8722

>NTDB_id=250734 CRM98_RS04730 WP_002851255.1 867268..867585(+) (ctsR) [Campylobacter jejuni strain FDAARGOS_422]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKINININ

Nucleotide


Download         Length: 318 bp        

>NTDB_id=250734 CRM98_RS04730 WP_002851255.1 867268..867585(+) (ctsR) [Campylobacter jejuni strain FDAARGOS_422]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGTATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q0P8E2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

100

98.095

0.981

Multiple sequence alignment