Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   CRM97_RS00560 Genome accession   NZ_CP023866
Coordinates   111926..112237 (-) Length   103 a.a.
NCBI ID   WP_002855438.1    Uniprot ID   A0AA44HLF8
Organism   Campylobacter jejuni strain FDAARGOS_421     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 106926..117237
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CRM97_RS00540 (CRM97_00540) ctsE 107795..109354 (-) 1560 WP_002867246.1 GspE/PulE family protein Machinery gene
  CRM97_RS00545 (CRM97_00545) ctsX 109344..109931 (-) 588 WP_002867245.1 hypothetical protein Machinery gene
  CRM97_RS00550 (CRM97_00550) ctsP 109935..110543 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  CRM97_RS00555 (CRM97_00555) ctsD 110536..111948 (-) 1413 WP_011049986.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  CRM97_RS00560 (CRM97_00560) ctsR 111926..112237 (-) 312 WP_002855438.1 hypothetical protein Machinery gene
  CRM97_RS00565 (CRM97_00565) nifJ 112261..115821 (-) 3561 WP_002877436.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  CRM97_RS00570 (CRM97_00570) - 115914..116555 (-) 642 WP_002867242.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12475.38 Da        Isoelectric Point: 5.8722

>NTDB_id=250704 CRM97_RS00560 WP_002855438.1 111926..112237(-) (ctsR) [Campylobacter jejuni strain FDAARGOS_421]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=250704 CRM97_RS00560 WP_002855438.1 111926..112237(-) (ctsR) [Campylobacter jejuni strain FDAARGOS_421]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGTATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

100

100

1

Multiple sequence alignment