Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   CRH04_RS06960 Genome accession   NZ_CP023861
Coordinates   1390693..1392384 (+) Length   563 a.a.
NCBI ID   WP_003722494.1    Uniprot ID   A0A5D5RB09
Organism   Listeria monocytogenes EGD-e     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1385693..1397384
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CRH04_RS06930 (CRH04_07065) - 1385703..1385930 (+) 228 WP_003722489.1 exodeoxyribonuclease VII small subunit -
  CRH04_RS06935 (CRH04_07070) - 1385933..1386814 (+) 882 WP_003732268.1 polyprenyl synthetase family protein -
  CRH04_RS06940 (CRH04_07075) - 1387013..1387213 (+) 201 WP_003719639.1 cold-shock protein -
  CRH04_RS06945 (CRH04_07080) dxs 1387380..1389209 (+) 1830 WP_003733809.1 1-deoxy-D-xylulose-5-phosphate synthase -
  CRH04_RS06950 (CRH04_07085) - 1389206..1390030 (+) 825 WP_003722492.1 TlyA family RNA methyltransferase -
  CRH04_RS06955 (CRH04_07090) ahrC 1390221..1390670 (+) 450 WP_003722493.1 transcriptional regulator AhrC/ArgR -
  CRH04_RS06960 (CRH04_07095) recN 1390693..1392384 (+) 1692 WP_003722494.1 DNA repair protein RecN Machinery gene
  CRH04_RS06965 (CRH04_07100) - 1392513..1393379 (+) 867 WP_003732271.1 phosphate acyltransferase -
  CRH04_RS06970 (CRH04_07105) buk 1393516..1394583 (+) 1068 WP_003722496.1 butyrate kinase -
  CRH04_RS06975 (CRH04_07110) lpdA 1394598..1396025 (+) 1428 WP_010990105.1 dihydrolipoyl dehydrogenase -
  CRH04_RS06980 (CRH04_07115) - 1396050..1397045 (+) 996 WP_003722498.1 thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha -

Sequence

Protein


Download         Length: 563 a.a.        Molecular weight: 63523.36 Da        Isoelectric Point: 5.0673

>NTDB_id=250620 CRH04_RS06960 WP_003722494.1 1390693..1392384(+) (recN) [Listeria monocytogenes EGD-e]
MLQEMTIKNFAIIESLSLTFQEGMTVLTGETGAGKSIIIDALGLLVGGRGSADFIRHGEERLELQGLFALAEDNLACRNA
LIENGIDASDDMVVLERSLFRSGKNSCRINGKLVTTVLLRQIGSKLIDIHSQHEHQELMNEEFHLSLLDRFASDKIKPAL
TKYQTNFKEYQTIEKEWQNWTKNERELAQRLDMLRFQQQEIENADLQAGEEDRLLEQKNILANFEKLNENLQGAYAAIQG
EPGGLEFVGEAMRQMETAASIHTDYKAVSEAISSSYYMLEDSMSQIRQSLDQLEFQPEELNQIESRLNDLNQLKRKYGKT
IEDIIQYEQEISSEMEKLTDSESHVGHLETKLATLKTELTKQAATLTDIRKKAAVTLEKQIKQELNQLYMEKAIFSVRFE
ANKMELTELGQDSVVFYMSTNPGEPLKPLAKIASGGELSRMMLALKTIFSRHQGITSIIFDEVDTGVSGRVGQAIAEKIY
AVSVGSQVLCISHLPQVAAMANHHYYITKKVQNKRTTTSVTVLKGVEKVEEISRMIAGIEVTELTKQHAKEMIEQAEKVK
QTY

Nucleotide


Download         Length: 1692 bp        

>NTDB_id=250620 CRH04_RS06960 WP_003722494.1 1390693..1392384(+) (recN) [Listeria monocytogenes EGD-e]
TTGCTTCAAGAAATGACAATTAAAAACTTTGCTATCATCGAATCGCTTTCTTTAACTTTTCAAGAAGGGATGACGGTACT
TACGGGGGAGACCGGCGCTGGTAAATCAATTATTATTGATGCGCTTGGTCTTCTTGTTGGCGGACGCGGATCAGCTGATT
TTATCCGTCACGGAGAGGAACGTTTAGAGCTTCAAGGGCTTTTTGCGCTAGCAGAGGATAACCTTGCTTGCCGAAATGCT
TTAATAGAAAATGGCATAGATGCTTCGGATGATATGGTTGTACTAGAACGCAGCCTGTTTCGCTCGGGAAAAAATAGTTG
CCGAATCAATGGCAAGCTTGTAACTACTGTTCTCTTGCGCCAAATTGGCTCGAAATTAATAGATATCCATAGTCAGCATG
AACATCAGGAATTGATGAATGAGGAGTTTCATTTATCATTACTTGATCGATTCGCTTCTGACAAAATCAAGCCAGCACTA
ACCAAGTACCAAACTAATTTCAAAGAATATCAAACAATTGAGAAAGAATGGCAAAATTGGACAAAAAATGAGCGAGAATT
AGCACAACGTCTTGATATGCTCCGTTTTCAACAACAGGAAATTGAAAATGCCGATTTGCAAGCTGGTGAAGAAGATCGTT
TGTTAGAACAAAAAAATATCTTAGCCAATTTTGAAAAACTTAACGAAAATTTACAAGGCGCTTATGCGGCGATTCAAGGC
GAGCCAGGTGGACTTGAATTCGTTGGGGAAGCGATGCGTCAAATGGAGACAGCTGCAAGTATTCATACGGATTATAAAGC
AGTTAGTGAAGCAATTTCTTCTAGCTACTATATGTTAGAAGATAGCATGAGCCAAATCAGACAGTCACTTGATCAGCTCG
AATTCCAACCAGAAGAACTTAATCAAATTGAATCGCGTTTAAATGATTTAAACCAATTGAAACGCAAATATGGTAAAACA
ATTGAAGATATCATCCAGTATGAGCAAGAAATAAGTAGCGAAATGGAAAAACTAACGGATAGTGAATCGCATGTGGGTCA
TTTAGAGACAAAATTAGCCACACTCAAAACAGAACTAACAAAACAAGCAGCTACGCTCACTGATATCCGTAAAAAAGCAG
CTGTCACATTAGAAAAACAAATTAAACAAGAATTAAATCAACTTTATATGGAGAAAGCCATTTTTAGTGTGCGTTTTGAA
GCAAACAAAATGGAACTAACAGAATTGGGACAAGATAGCGTCGTCTTTTATATGTCAACAAATCCAGGAGAACCATTAAA
ACCATTAGCAAAAATTGCTTCTGGCGGAGAGTTATCCAGAATGATGTTAGCTTTAAAAACCATTTTCTCTAGACACCAAG
GTATTACATCAATTATTTTCGATGAAGTTGATACCGGAGTAAGTGGACGCGTTGGTCAAGCGATTGCAGAAAAAATTTAT
GCTGTTTCAGTCGGCTCGCAAGTACTATGTATCAGTCATTTGCCTCAAGTAGCAGCAATGGCGAACCACCATTACTACAT
TACAAAAAAAGTCCAAAATAAACGTACAACGACTTCCGTTACAGTGCTTAAAGGAGTAGAAAAAGTAGAAGAAATCAGCC
GAATGATTGCTGGTATAGAAGTCACTGAACTAACAAAACAACATGCAAAAGAAATGATTGAACAAGCGGAAAAAGTAAAA
CAAACGTATTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-513)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5D5RB09

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

52.604

100

0.538

Multiple sequence alignment