Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   CRH04_RS01235 Genome accession   NZ_CP023861
Coordinates   253198..254571 (+) Length   457 a.a.
NCBI ID   WP_010989380.1    Uniprot ID   Q48761
Organism   Listeria monocytogenes EGD-e     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 248198..259571
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CRH04_RS01215 (CRH04_01230) - 248553..249011 (+) 459 WP_003723894.1 CtsR family transcriptional regulator -
  CRH04_RS01220 (CRH04_01235) - 249024..249542 (+) 519 WP_003732822.1 UvrB/UvrC motif-containing protein -
  CRH04_RS01225 (CRH04_01240) - 249539..250561 (+) 1023 WP_010989379.1 protein arginine kinase -
  CRH04_RS01230 (CRH04_01245) - 250590..253052 (+) 2463 WP_003723897.1 ATP-dependent Clp protease ATP-binding subunit -
  CRH04_RS01235 (CRH04_01250) radA 253198..254571 (+) 1374 WP_010989380.1 DNA repair protein RadA Machinery gene
  CRH04_RS01240 (CRH04_01255) - 254705..255778 (+) 1074 WP_003723899.1 PIN/TRAM domain-containing protein -
  CRH04_RS01245 (CRH04_01260) ispD 255798..256496 (+) 699 WP_010989381.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  CRH04_RS01250 (CRH04_01265) ispF 256489..256962 (+) 474 WP_009930888.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  CRH04_RS01255 (CRH04_01270) gltX 256981..258456 (+) 1476 WP_003732826.1 glutamate--tRNA ligase -
  CRH04_RS01260 (CRH04_01275) epsC 258854..259468 (+) 615 WP_003726845.1 serine O-acetyltransferase EpsC -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49981.59 Da        Isoelectric Point: 7.9613

>NTDB_id=250611 CRH04_RS01235 WP_010989380.1 253198..254571(+) (radA) [Listeria monocytogenes EGD-e]
MAKAKRTTKFVCQACGYESAKWMGKCPNCNEWNQMVEALEPSKKSRSAFNHTGEPSKATPITQIASETEKRVETNMPELN
RVLGGGVVPGSMVLVGGDPGIGKSTLLLQVSAQLTLTNKKVLYISGEESIKQTKLRAERLQVSGDNLYVYAETNLEAVQE
TIDFVKPDFVVIDSIQTVYHSDVTSAAGSVSQVRECTATLMRIAKMQNIAIFIVGHVTKEGAIAGPRLLEHMVDTVLYFE
GERHHAYRILRAVKNRFGSTNEMGIFEMRDVGLVEVANPSEVFLEERLEGASGSTVVASMEGTRPVLVEIQALVSPTMFG
NAKRMATGIDYNKVSLIMAVLEKRVGLMLQNQDAYLKAAGGVKLDEPAVDLAVAVSVASSYRDKPTRSTDCFIGELGLTG
EIRRVARIEQRVQEAAKLGFKRIFIPKNNEGNWKIPKDVQVVGVETIGEALKKALPD

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=250611 CRH04_RS01235 WP_010989380.1 253198..254571(+) (radA) [Listeria monocytogenes EGD-e]
ATGGCTAAAGCAAAAAGGACAACCAAATTTGTGTGTCAGGCATGTGGATATGAATCGGCAAAATGGATGGGAAAATGTCC
GAATTGCAACGAGTGGAATCAGATGGTAGAAGCCTTAGAACCGTCAAAAAAATCACGCTCAGCTTTCAATCATACAGGAG
AGCCTTCAAAAGCGACTCCAATTACTCAAATAGCAAGTGAAACAGAAAAACGAGTTGAAACAAATATGCCCGAGTTAAAT
AGAGTTCTTGGTGGCGGTGTGGTTCCTGGGTCTATGGTACTTGTCGGAGGAGACCCTGGTATTGGTAAATCAACATTGTT
ATTACAAGTATCAGCGCAACTCACACTTACAAATAAAAAAGTATTGTATATCTCAGGAGAAGAATCAATCAAACAAACGA
AGCTACGGGCAGAACGCTTGCAAGTTTCGGGAGATAATTTATATGTGTATGCAGAAACAAATTTAGAAGCAGTTCAAGAA
ACGATTGATTTTGTAAAACCTGATTTTGTAGTCATTGACTCTATTCAGACTGTTTATCATTCTGATGTTACAAGTGCAGC
AGGGAGTGTTTCTCAAGTTAGGGAATGTACAGCGACATTGATGCGAATTGCTAAAATGCAAAACATCGCTATCTTTATTG
TTGGGCATGTAACTAAGGAAGGTGCTATTGCGGGACCGCGCCTATTAGAACATATGGTTGATACTGTACTCTATTTTGAA
GGGGAGCGTCACCATGCTTACCGGATTTTGCGTGCAGTGAAAAACCGTTTTGGTTCCACTAACGAAATGGGTATATTTGA
AATGCGAGATGTAGGACTTGTTGAAGTTGCTAATCCTTCCGAGGTATTCTTGGAAGAACGTCTTGAAGGCGCTTCAGGCT
CAACGGTTGTAGCTTCTATGGAAGGAACTCGCCCCGTCCTTGTGGAAATACAAGCGCTTGTTTCGCCAACGATGTTCGGT
AATGCTAAGCGAATGGCGACGGGAATAGACTACAACAAAGTTTCGCTAATTATGGCTGTTTTAGAAAAGCGAGTAGGTTT
AATGTTGCAAAACCAAGATGCTTATTTGAAAGCGGCGGGCGGGGTTAAATTGGATGAGCCTGCAGTGGATTTGGCGGTTG
CAGTCAGTGTTGCATCTAGTTATCGTGATAAACCAACAAGAAGTACGGACTGCTTTATTGGGGAACTTGGACTTACAGGT
GAAATTCGTCGTGTAGCAAGAATTGAACAACGCGTACAAGAAGCAGCAAAACTTGGCTTTAAGCGAATTTTTATTCCTAA
AAATAACGAAGGTAATTGGAAAATACCGAAAGACGTGCAAGTGGTTGGGGTGGAAACGATTGGAGAAGCTTTGAAGAAAG
CTTTACCAGATTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(10-37)

AAA domain (AAA_25)

(64-221)

Subunit ChlI of Mg-chelatase (ChlI)

(363-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q48761

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

68.64

99.781

0.685
  radA Streptococcus mitis NCTC 12261

65.275

99.562

0.65
  radA Streptococcus pneumoniae D39

65.044

98.906

0.643
  radA Streptococcus pneumoniae TIGR4

65.044

98.906

0.643
  radA Streptococcus pneumoniae R6

65.044

98.906

0.643
  radA Streptococcus pneumoniae Rx1

65.044

98.906

0.643
  radA Streptococcus mitis SK321

64.823

98.906

0.641

Multiple sequence alignment