Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   CRH11_RS18530 Genome accession   NZ_CP023859
Coordinates   3706730..3707482 (-) Length   250 a.a.
NCBI ID   WP_033574185.1    Uniprot ID   -
Organism   Bacillus velezensis strain L-1     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3701730..3712482
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CRH11_RS18505 (CRH11_18500) mreC 3702166..3703029 (-) 864 WP_007408166.1 rod shape-determining protein MreC -
  CRH11_RS18510 (CRH11_18505) mreB 3703060..3704073 (-) 1014 WP_003152647.1 cell shape-determining protein MreB -
  CRH11_RS18515 (CRH11_18510) radC 3704165..3704860 (-) 696 WP_007408165.1 RadC family protein -
  CRH11_RS18520 (CRH11_18515) - 3704892..3705461 (-) 570 WP_094031869.1 Maf family protein -
  CRH11_RS18525 (CRH11_18520) - 3705602..3706603 (-) 1002 WP_012118106.1 SPOR domain-containing protein -
  CRH11_RS18530 (CRH11_18525) comC 3706730..3707482 (-) 753 WP_033574185.1 prepilin peptidase Machinery gene
  CRH11_RS18535 (CRH11_18530) - 3707622..3708914 (-) 1293 WP_033574186.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  CRH11_RS18540 (CRH11_18535) - 3708973..3711615 (-) 2643 WP_020956152.1 valine--tRNA ligase -
  CRH11_RS18545 (CRH11_18540) - 3712068..3712259 (+) 192 WP_003152639.1 hypothetical protein -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27253.96 Da        Isoelectric Point: 9.4293

>NTDB_id=250591 CRH11_RS18530 WP_033574185.1 3706730..3707482(-) (comC) [Bacillus velezensis strain L-1]
MLLILFFLGLIFGSFFYTAACRIPLRISVISPRSACSFCRLPLSWGELVPVVSYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTAAGFHFGFSKELLVALLFLSLLMIVTMTDLQYMLIPDKVLLFFLPLFIAGRMFSPLDSWYAGFAGAVCGFFLLVFI
MFVSKGGIGAGDVKLFGVIGLTLGVKLVLIAFFLSVMIGAVYGMCAAARGRLGKKQPFPFAPAISAGSALSYLYGEELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=250591 CRH11_RS18530 WP_033574185.1 3706730..3707482(-) (comC) [Bacillus velezensis strain L-1]
GTGCTTTTGATTCTGTTTTTTCTAGGCTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGCTGCGAAT
CTCGGTTATTTCGCCGCGTTCAGCCTGTTCGTTTTGCCGCTTGCCGCTCTCCTGGGGGGAGCTTGTGCCCGTCGTTTCCT
ATATTCTGCAAAGAGGCAGATGCAGAAACTGCCGTGCGAAGCTGTCGGTTATGTATCCGGCGGCGGAATGCTGGACGGCA
TGTTTATTCACGGCTGCAGGCTTTCATTTCGGTTTCTCAAAAGAACTGTTAGTCGCGCTGTTATTTCTGTCTCTGCTCAT
GATTGTTACTATGACGGATCTGCAATATATGCTGATTCCTGACAAAGTTCTGCTGTTTTTTCTTCCGCTTTTCATCGCCG
GGCGTATGTTTTCTCCGCTGGATTCATGGTATGCAGGGTTTGCCGGAGCCGTTTGCGGATTTTTTCTGCTTGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGACGCTCGGCGTAAAGCT
CGTGCTCATTGCATTCTTTCTTTCCGTTATGATCGGAGCCGTATACGGTATGTGCGCCGCAGCCCGGGGCAGGCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGCCGGGAGCGCTTTGAGTTATTTATACGGTGAAGAGCTGTTTTCG
TTTTACATCAAGCTCGCTTCAGGAGGGGCTTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)

Type IV leader peptidase family (Peptidase_A24)

(101-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

58.468

99.2

0.58

Multiple sequence alignment