Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   CRH11_RS12720 Genome accession   NZ_CP023859
Coordinates   2422339..2422623 (+) Length   94 a.a.
NCBI ID   WP_003154557.1    Uniprot ID   -
Organism   Bacillus velezensis strain L-1     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2417339..2427623
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CRH11_RS12695 (CRH11_12685) - 2418582..2419490 (+) 909 WP_038463811.1 ketopantoate reductase family protein -
  CRH11_RS12700 (CRH11_12690) - 2419522..2420754 (-) 1233 WP_007409644.1 aminopeptidase -
  CRH11_RS12705 (CRH11_12695) - 2420855..2420989 (-) 135 WP_012117458.1 protein YkpC -
  CRH11_RS12710 (CRH11_12700) mreBH 2421061..2422068 (-) 1008 WP_003154558.1 cell shape-determining protein MreBH -
  CRH11_RS12720 (CRH11_12710) abrB 2422339..2422623 (+) 285 WP_003154557.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  CRH11_RS12725 (CRH11_12715) - 2422796..2424100 (+) 1305 WP_032874761.1 ATP-binding protein -
  CRH11_RS12730 (CRH11_12720) - 2424102..2424929 (+) 828 WP_038463814.1 gamma-glutamylcyclotransferase -
  CRH11_RS12735 (CRH11_12725) ktrC 2424970..2425635 (+) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  CRH11_RS12740 (CRH11_12730) ade 2425783..2427516 (+) 1734 WP_038463817.1 adenine deaminase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10584.45 Da        Isoelectric Point: 5.2271

>NTDB_id=250568 CRH11_RS12720 WP_003154557.1 2422339..2422623(+) (abrB) [Bacillus velezensis strain L-1]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITPENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=250568 CRH11_RS12720 WP_003154557.1 2422339..2422623(+) (abrB) [Bacillus velezensis strain L-1]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGAGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTGAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACGGGGGAAATTACTCCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAGGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543

Multiple sequence alignment