Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LCA_RS08390 Genome accession   NC_007576
Coordinates   1664119..1665483 (-) Length   454 a.a.
NCBI ID   WP_011375373.1    Uniprot ID   A0A094XXJ4
Organism   Latilactobacillus sakei subsp. sakei 23K     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1659119..1670483
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCA_RS08370 (LCA_1679) rlmB 1659501..1660388 (-) 888 WP_011375369.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  LCA_RS08375 (LCA_1680) - 1660375..1660782 (-) 408 WP_004265086.1 Mini-ribonuclease 3 -
  LCA_RS08380 (LCA_1681) cysS 1660779..1662185 (-) 1407 WP_011375371.1 cysteine--tRNA ligase -
  LCA_RS08385 (LCA_1682) - 1662976..1664088 (-) 1113 WP_011375372.1 PIN/TRAM domain-containing protein -
  LCA_RS08390 (LCA_1683) radA 1664119..1665483 (-) 1365 WP_011375373.1 DNA repair protein RadA Machinery gene
  LCA_RS08395 (LCA_1684) - 1665556..1666095 (-) 540 WP_011375374.1 dUTP diphosphatase -
  LCA_RS08400 (LCA_1685) rpiA 1666291..1666974 (+) 684 WP_011375375.1 ribose-5-phosphate isomerase RpiA -
  LCA_RS08405 (LCA_1686) - 1667449..1668771 (+) 1323 Protein_1638 aminopeptidase C -
  LCA_RS08410 (LCA_1688) - 1668975..1670321 (+) 1347 WP_011375378.1 C1 family peptidase -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 49598.97 Da        Isoelectric Point: 7.3488

>NTDB_id=25045 LCA_RS08390 WP_011375373.1 1664119..1665483(-) (radA) [Latilactobacillus sakei subsp. sakei 23K]
MAKVKTQFVCQNCGYSSPRFLGRCPNCGAWNQMVEEREQPAAAAKSNFTISGRATEPEKISTVNIQKEPRVKTELNELNR
VLGGGVVPGSLILIGGDPGIGKSTLLLQVSGQLEKVGKILYVSGEESASQIKMRANRLGVNGDQLYLYPETDMGNIRHQI
ETLKPEYVVIDSIQTMSEPEVTSAVGSVSQVRQVTAELMRIAKTNQITIFVVGHVTKEGAIAGPKILEHMVDTVLYFEGD
THHTYRILRSVKNRFGSTNEIGIFEMREAGLQEVANPSEIFLEERLAGATGSAVVVSMEGTRPILVELQTLITPTLFGNA
KRTSSGLDHNRVSLIMAVLEKRASLMLSNQDAYLKATGGVKLDEPAIDLAMAVSIASSYRDKEIPPTDCFVGEIGLTGEI
RRVNRIEQRVGEAAKLGFKRIYVPKNNLQGWDPPTDIQVVGVTTIAETLKKVFN

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=25045 LCA_RS08390 WP_011375373.1 1664119..1665483(-) (radA) [Latilactobacillus sakei subsp. sakei 23K]
GTGGCTAAAGTTAAAACGCAGTTTGTCTGCCAGAATTGTGGCTATAGTTCCCCCAGATTCTTGGGGCGCTGTCCGAATTG
TGGTGCTTGGAACCAAATGGTTGAAGAACGTGAACAACCAGCCGCAGCGGCAAAATCAAATTTCACAATTTCAGGACGCG
CCACTGAACCTGAAAAAATTAGTACCGTTAATATCCAAAAAGAACCCCGTGTTAAAACGGAATTAAATGAATTGAATCGT
GTTTTAGGTGGCGGCGTTGTGCCAGGGTCACTGATTTTAATCGGTGGGGATCCTGGGATTGGGAAATCAACCTTGTTACT
ACAAGTTTCAGGGCAACTTGAAAAAGTGGGTAAGATCCTATATGTTTCAGGTGAAGAAAGTGCCTCGCAAATTAAGATGC
GGGCGAATCGATTAGGAGTTAATGGCGATCAATTGTATCTGTATCCCGAAACGGATATGGGCAATATTCGCCACCAAATC
GAAACGCTCAAACCAGAATACGTCGTGATTGATTCGATTCAAACGATGAGTGAACCAGAAGTGACTTCCGCAGTCGGGAG
TGTTTCGCAAGTTCGCCAGGTAACCGCAGAATTGATGCGGATTGCTAAAACGAATCAGATTACCATTTTCGTGGTGGGAC
ATGTGACGAAGGAAGGGGCAATTGCCGGCCCTAAGATTTTGGAACATATGGTGGATACCGTGTTGTACTTTGAAGGTGAC
ACTCATCACACTTACCGAATTTTACGGTCTGTTAAAAACCGATTTGGTTCAACCAACGAAATCGGGATTTTCGAAATGCG
GGAAGCAGGCTTGCAAGAAGTCGCTAATCCATCCGAAATTTTCCTTGAAGAACGGCTGGCTGGTGCGACCGGTTCGGCGG
TTGTGGTTTCAATGGAAGGGACAAGACCAATCTTGGTTGAGTTACAAACTTTGATTACCCCAACCTTGTTCGGAAATGCA
AAACGGACTTCTTCGGGATTAGATCATAATCGGGTGTCATTGATTATGGCGGTTTTAGAAAAGCGGGCGAGTTTGATGCT
TTCCAATCAAGATGCTTATCTTAAAGCAACCGGCGGGGTTAAGTTAGACGAACCGGCGATTGATTTGGCGATGGCCGTCT
CGATTGCTTCCAGTTATCGCGATAAAGAAATTCCACCAACCGATTGTTTTGTCGGTGAAATTGGCTTGACGGGTGAAATT
CGGCGGGTCAATCGGATTGAACAACGCGTTGGCGAAGCGGCGAAGTTAGGTTTTAAACGGATTTATGTCCCTAAAAATAA
TTTGCAAGGTTGGGATCCACCAACTGATATTCAAGTCGTTGGGGTCACCACAATTGCAGAAACTTTAAAAAAAGTATTCA
ACTAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(363-427)

AAA domain (AAA_25)

(70-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A094XXJ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

69.316

99.78

0.692
  radA Streptococcus mitis SK321

69.316

99.78

0.692
  radA Streptococcus pneumoniae Rx1

69.095

99.78

0.689
  radA Streptococcus pneumoniae D39

69.095

99.78

0.689
  radA Streptococcus pneumoniae R6

69.095

99.78

0.689
  radA Streptococcus pneumoniae TIGR4

69.095

99.78

0.689
  radA Bacillus subtilis subsp. subtilis str. 168

65.121

99.78

0.65

Multiple sequence alignment