Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   CRT36_RS17555 Genome accession   NZ_CP023839
Coordinates   3505814..3506410 (-) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain 4/1-2     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3500814..3511410
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CRT36_RS17540 (CRT36_17545) helD 3501022..3503076 (-) 2055 WP_009485779.1 DNA helicase IV -
  CRT36_RS17545 (CRT36_17550) - 3503201..3503647 (+) 447 WP_002898425.1 YccF domain-containing protein -
  CRT36_RS17550 (CRT36_17555) yccS 3503665..3505800 (+) 2136 WP_002898422.1 YccS family putative transporter -
  CRT36_RS17555 (CRT36_17560) sxy/tfoX 3505814..3506410 (-) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  CRT36_RS17565 (CRT36_17570) sulA 3506759..3507268 (+) 510 WP_004179215.1 SOS-induced cell division inhibitor SulA -
  CRT36_RS17570 (CRT36_17575) ompA 3507621..3508691 (+) 1071 WP_002898408.1 porin OmpA -
  CRT36_RS17575 (CRT36_17580) matP 3508823..3509275 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  CRT36_RS17580 (CRT36_17585) - 3509461..3511218 (+) 1758 WP_004147851.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=250441 CRT36_RS17555 WP_004179217.1 3505814..3506410(-) (sxy/tfoX) [Klebsiella pneumoniae strain 4/1-2]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=250441 CRT36_RS17555 WP_004179217.1 3505814..3506410(-) (sxy/tfoX) [Klebsiella pneumoniae strain 4/1-2]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTATTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51

Multiple sequence alignment