Detailed information
Bioinformatically predicted
Overview
| Name | rapC | Type | Regulator |
| Locus tag | DDT10_RS06300 | Genome accession | NZ_CP029071 |
| Coordinates | 1224154..1225290 (+) | Length | 378 a.a. |
| NCBI ID | WP_087920760.1 | Uniprot ID | A7Z3N2 |
| Organism | Bacillus amyloliquefaciens strain ALB79 | ||
| Function | inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation |
||
Genomic Context
Location: 1219154..1230290
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DDT10_RS06280 (DDT10_06280) | - | 1219603..1221048 (+) | 1446 | WP_053573480.1 | tagaturonate reductase | - |
| DDT10_RS06285 (DDT10_06285) | - | 1221045..1222538 (+) | 1494 | WP_053573481.1 | altronate dehydratase family protein | - |
| DDT10_RS06290 (DDT10_06290) | - | 1222572..1223336 (-) | 765 | WP_007610763.1 | sulfite exporter TauE/SafE family protein | - |
| DDT10_RS06295 (DDT10_06295) | - | 1223481..1223948 (-) | 468 | WP_015417279.1 | DinB family protein | - |
| DDT10_RS06300 (DDT10_06300) | rapC | 1224154..1225290 (+) | 1137 | WP_087920760.1 | Rap family tetratricopeptide repeat protein | Regulator |
| DDT10_RS19650 | - | 1225280..1225414 (+) | 135 | WP_003154881.1 | PhrA family phosphatase inhibitor | - |
| DDT10_RS06305 (DDT10_06305) | - | 1225557..1226510 (+) | 954 | WP_015417280.1 | N-acetylmuramoyl-L-alanine amidase | - |
| DDT10_RS06310 (DDT10_06310) | - | 1226548..1226925 (-) | 378 | WP_007610770.1 | PH domain-containing protein | - |
| DDT10_RS06315 (DDT10_06315) | - | 1227036..1227638 (+) | 603 | WP_053573482.1 | poly-gamma-glutamate hydrolase family protein | - |
| DDT10_RS06320 (DDT10_06320) | - | 1227709..1228545 (+) | 837 | WP_015417282.1 | manganese catalase family protein | - |
| DDT10_RS06325 (DDT10_06325) | - | 1228567..1229157 (-) | 591 | WP_007407286.1 | ImmA/IrrE family metallo-endopeptidase | - |
| DDT10_RS06335 (DDT10_06335) | xre | 1229306..1229644 (-) | 339 | WP_003154871.1 | HTH-type transcriptional regulator Xre | - |
| DDT10_RS06340 (DDT10_06340) | - | 1229835..1230014 (+) | 180 | WP_031378816.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 378 a.a. Molecular weight: 45073.28 Da Isoelectric Point: 4.9159
>NTDB_id=250375 DDT10_RS06300 WP_087920760.1 1224154..1225290(+) (rapC) [Bacillus amyloliquefaciens strain ALB79]
MRMKQTIPSSFVGLKINEWYTHIRQFHVLEAERVKREVEREIEDMEEDQDLLLYYSLMEFRHRVMLDYIKPLKEDPSQPE
FSELLEDIEGNQYKLTGLLDYYFNFFRGMYEFKQKMFLNAMMYYKRAEKNLALVSDDIEKAEFAFKMAEIFYNLKQTYVS
MSYAVQALETYQSYETYNVRRIQCEFVIAGNYDDMQYPERALPHLELALDLAKQEGNPRLISSALYNLGNCYEKMGDLSK
AAEYFETSVSICRSEKFDNLPHSIYSLTQVLYKQNTTAEAEKQYRLGLSIAREYNDELFVNLFQFLHALYGKEMDNASVR
HTFDFLEEHMLYPYVEELAHDAAKFYMKHGQPEKALTFYEKMVHAQKQIQRGDCLYEI
MRMKQTIPSSFVGLKINEWYTHIRQFHVLEAERVKREVEREIEDMEEDQDLLLYYSLMEFRHRVMLDYIKPLKEDPSQPE
FSELLEDIEGNQYKLTGLLDYYFNFFRGMYEFKQKMFLNAMMYYKRAEKNLALVSDDIEKAEFAFKMAEIFYNLKQTYVS
MSYAVQALETYQSYETYNVRRIQCEFVIAGNYDDMQYPERALPHLELALDLAKQEGNPRLISSALYNLGNCYEKMGDLSK
AAEYFETSVSICRSEKFDNLPHSIYSLTQVLYKQNTTAEAEKQYRLGLSIAREYNDELFVNLFQFLHALYGKEMDNASVR
HTFDFLEEHMLYPYVEELAHDAAKFYMKHGQPEKALTFYEKMVHAQKQIQRGDCLYEI
Nucleotide
Download Length: 1137 bp
>NTDB_id=250375 DDT10_RS06300 WP_087920760.1 1224154..1225290(+) (rapC) [Bacillus amyloliquefaciens strain ALB79]
TTGAGGATGAAGCAGACTATTCCGTCCTCTTTTGTCGGGCTCAAAATTAATGAATGGTATACCCATATCCGGCAGTTTCA
CGTTCTTGAGGCGGAGCGCGTCAAACGTGAAGTAGAGAGAGAGATCGAGGATATGGAAGAAGATCAGGATCTGCTGCTGT
ATTATTCATTAATGGAATTCAGACACCGTGTCATGCTGGATTACATCAAGCCCTTAAAGGAGGACCCTTCTCAGCCTGAG
TTTTCAGAATTATTGGAAGACATTGAAGGCAACCAGTATAAACTGACAGGACTGCTTGATTACTACTTTAATTTTTTTCG
AGGAATGTACGAATTTAAACAGAAAATGTTCCTAAACGCCATGATGTATTACAAACGGGCTGAAAAAAACCTTGCACTCG
TTTCTGATGACATCGAGAAAGCTGAGTTTGCTTTTAAAATGGCCGAGATATTTTACAACCTGAAACAAACCTACGTCTCC
ATGAGTTATGCCGTTCAAGCCCTTGAAACGTACCAATCGTATGAGACGTACAACGTCCGCAGAATCCAATGTGAATTCGT
TATTGCAGGGAATTATGATGACATGCAGTATCCAGAAAGAGCATTGCCCCACTTAGAACTTGCTTTAGATCTTGCAAAAC
AAGAAGGCAATCCCCGTCTTATCAGTTCAGCCTTATATAATCTCGGAAACTGTTACGAAAAAATGGGAGACCTCTCTAAA
GCAGCCGAATATTTTGAGACATCCGTTTCCATTTGCAGGTCAGAAAAGTTCGATAATCTTCCGCATTCTATTTACTCATT
AACACAGGTTCTTTATAAACAGAACACTACAGCCGAAGCAGAGAAGCAATACCGTCTCGGGCTCAGTATCGCCCGCGAAT
ACAATGATGAATTGTTTGTGAATCTGTTCCAATTTTTACATGCGTTATACGGCAAGGAAATGGATAACGCATCCGTCAGG
CACACGTTTGATTTTCTGGAAGAACACATGCTGTATCCGTATGTGGAAGAATTGGCGCATGATGCTGCCAAATTTTACAT
GAAACACGGACAGCCTGAAAAAGCGCTCACGTTTTATGAAAAAATGGTGCACGCCCAAAAACAAATCCAGAGAGGAGATT
GTCTATATGAAATCTAA
TTGAGGATGAAGCAGACTATTCCGTCCTCTTTTGTCGGGCTCAAAATTAATGAATGGTATACCCATATCCGGCAGTTTCA
CGTTCTTGAGGCGGAGCGCGTCAAACGTGAAGTAGAGAGAGAGATCGAGGATATGGAAGAAGATCAGGATCTGCTGCTGT
ATTATTCATTAATGGAATTCAGACACCGTGTCATGCTGGATTACATCAAGCCCTTAAAGGAGGACCCTTCTCAGCCTGAG
TTTTCAGAATTATTGGAAGACATTGAAGGCAACCAGTATAAACTGACAGGACTGCTTGATTACTACTTTAATTTTTTTCG
AGGAATGTACGAATTTAAACAGAAAATGTTCCTAAACGCCATGATGTATTACAAACGGGCTGAAAAAAACCTTGCACTCG
TTTCTGATGACATCGAGAAAGCTGAGTTTGCTTTTAAAATGGCCGAGATATTTTACAACCTGAAACAAACCTACGTCTCC
ATGAGTTATGCCGTTCAAGCCCTTGAAACGTACCAATCGTATGAGACGTACAACGTCCGCAGAATCCAATGTGAATTCGT
TATTGCAGGGAATTATGATGACATGCAGTATCCAGAAAGAGCATTGCCCCACTTAGAACTTGCTTTAGATCTTGCAAAAC
AAGAAGGCAATCCCCGTCTTATCAGTTCAGCCTTATATAATCTCGGAAACTGTTACGAAAAAATGGGAGACCTCTCTAAA
GCAGCCGAATATTTTGAGACATCCGTTTCCATTTGCAGGTCAGAAAAGTTCGATAATCTTCCGCATTCTATTTACTCATT
AACACAGGTTCTTTATAAACAGAACACTACAGCCGAAGCAGAGAAGCAATACCGTCTCGGGCTCAGTATCGCCCGCGAAT
ACAATGATGAATTGTTTGTGAATCTGTTCCAATTTTTACATGCGTTATACGGCAAGGAAATGGATAACGCATCCGTCAGG
CACACGTTTGATTTTCTGGAAGAACACATGCTGTATCCGTATGTGGAAGAATTGGCGCATGATGCTGCCAAATTTTACAT
GAAACACGGACAGCCTGAAAAAGCGCTCACGTTTTATGAAAAAATGGTGCACGCCCAAAAACAAATCCAGAGAGGAGATT
GTCTATATGAAATCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| rapC | Bacillus subtilis subsp. subtilis str. 168 |
44.415 |
99.471 |
0.442 |
| rapF | Bacillus subtilis subsp. subtilis str. 168 |
42.48 |
100 |
0.426 |