Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   CK910_RS07085 Genome accession   NZ_CP023818
Coordinates   1522664..1524103 (+) Length   479 a.a.
NCBI ID   WP_043140004.1    Uniprot ID   -
Organism   Aeromonas sp. CA23     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1517664..1529103
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CK910_RS07055 (CK910_07055) mlaF 1518241..1519041 (-) 801 WP_043140015.1 phospholipid ABC transporter ATP-binding protein MlaF -
  CK910_RS07060 (CK910_07060) - 1519249..1520244 (+) 996 WP_043140012.1 KpsF/GutQ family sugar-phosphate isomerase -
  CK910_RS07065 (CK910_07065) kdsC 1520244..1520798 (+) 555 WP_098981822.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  CK910_RS07070 (CK910_07070) lptC 1520795..1521355 (+) 561 WP_098981825.1 LPS export ABC transporter periplasmic protein LptC -
  CK910_RS07075 (CK910_07075) lptA 1521342..1521869 (+) 528 WP_042867839.1 lipopolysaccharide transport periplasmic protein LptA -
  CK910_RS07080 (CK910_07080) lptB 1521873..1522598 (+) 726 WP_042867841.1 LPS export ABC transporter ATP-binding protein -
  CK910_RS07085 (CK910_07085) rpoN/rpoN1 1522664..1524103 (+) 1440 WP_043140004.1 RNA polymerase factor sigma-54 Machinery gene
  CK910_RS07090 (CK910_07090) hpf 1524125..1524412 (+) 288 WP_005305957.1 ribosome hibernation promoting factor -
  CK910_RS07095 (CK910_07095) ptsN 1524415..1524861 (+) 447 WP_042867845.1 PTS IIA-like nitrogen regulatory protein PtsN -
  CK910_RS07100 (CK910_07100) rapZ 1524904..1525770 (+) 867 WP_043140001.1 RNase adapter RapZ -
  CK910_RS07105 (CK910_07105) npr 1525791..1526063 (+) 273 WP_005314403.1 PTS phosphocarrier protein NPr -
  CK910_RS07110 (CK910_07110) - 1526082..1527986 (-) 1905 WP_098981831.1 transcription antiterminator -
  CK910_RS07115 (CK910_07115) - 1528090..1528830 (-) 741 WP_098981833.1 KDGP aldolase family protein -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 53807.73 Da        Isoelectric Point: 4.3416

>NTDB_id=250329 CK910_RS07085 WP_043140004.1 1522664..1524103(+) (rpoN/rpoN1) [Aeromonas sp. CA23]
MKPTLQLRLGQSLTMTPQLQQAIRLLQLSTLELQQEIQQALDNNPLLEQEENEVQETSPEEPVDASQLDSSDAMAQDQMP
DELPVDTTWEDVYSAGTAQSAGPIHDGEDSVYQGETTENLQDYLLWQMRLTPFSDLDAAIALAIIDAIDDSGYLTVSLED
IQAAVSSEDVEVELDEVEAVLKRVQHFDPVGIAARSVQECLLIQLGQYAPELPWLTEAREVINEHMDLLGNRDYRTLARK
TRLKESDLKEVLDLIQQLEPRPGNGIIQSDSQYVIPDVTVVKKGTKWVVELNPDSAPRIRVNETYAAMARQARTSQDTQF
IRSHLQEAKWFIKSLESRNDTLLKVASCIVEQQQGFFEYGEEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTPRGIFE
LKFFFSSHVNTEGGGECSSTAIRALIKKLVTAENPAKPLSDSKIADLLAEQGIMVARRTIAKYRESLLIPPSNQRKRLV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=250329 CK910_RS07085 WP_043140004.1 1522664..1524103(+) (rpoN/rpoN1) [Aeromonas sp. CA23]
ATGAAGCCGACATTACAGTTGCGTCTCGGTCAGTCCCTGACCATGACGCCGCAATTACAACAAGCGATTCGTCTGCTCCA
GCTCTCCACCCTGGAACTCCAGCAGGAAATTCAGCAAGCGCTCGATAACAACCCCTTGCTGGAGCAAGAGGAGAATGAGG
TGCAGGAGACCAGCCCGGAAGAGCCGGTCGATGCCAGTCAGCTCGACTCCAGCGATGCCATGGCCCAGGATCAGATGCCG
GACGAGTTGCCGGTGGATACCACCTGGGAGGATGTCTACTCGGCCGGCACGGCCCAGAGCGCAGGCCCCATCCACGACGG
GGAAGACAGCGTCTATCAGGGCGAAACCACCGAGAATCTGCAGGACTATCTGCTGTGGCAGATGCGACTCACGCCGTTCA
GCGATCTGGATGCCGCCATTGCCCTCGCCATCATAGATGCCATCGACGACTCCGGTTATCTGACCGTCTCCCTCGAAGAT
ATACAGGCGGCGGTGAGCAGCGAGGATGTCGAGGTAGAACTCGACGAGGTCGAGGCCGTGCTCAAGCGAGTGCAGCATTT
CGATCCGGTCGGCATCGCCGCCCGCTCGGTGCAGGAATGCCTGTTGATCCAGCTCGGTCAATACGCCCCCGAACTGCCCT
GGCTCACCGAGGCCAGAGAGGTGATCAACGAGCACATGGACTTGCTCGGCAATCGCGATTATCGCACCCTGGCGCGCAAG
ACCCGACTCAAGGAGAGCGACCTCAAGGAGGTGCTGGATCTCATCCAGCAGCTGGAGCCCAGACCGGGCAATGGCATCAT
ACAGAGCGACTCCCAGTACGTGATCCCGGATGTGACCGTGGTCAAGAAGGGCACCAAATGGGTGGTCGAGCTCAATCCCG
ATTCCGCGCCGCGCATCCGGGTCAACGAGACCTATGCCGCCATGGCACGCCAGGCGCGCACCAGCCAGGACACCCAGTTC
ATCCGTTCCCATCTGCAAGAGGCCAAGTGGTTCATCAAGAGCCTGGAGAGTCGCAATGACACCCTGCTCAAGGTGGCCAG
CTGTATTGTCGAGCAGCAGCAGGGCTTTTTCGAGTATGGTGAAGAGGCCATGAAGCCCATGGTGCTCAACGACATCGCCG
AAGCGGTAGAGATGCATGAGTCGACCATTTCCCGGGTAACGACCCAGAAATACATGCATACGCCCCGCGGCATCTTCGAA
CTGAAGTTTTTTTTCTCCAGTCATGTGAATACCGAAGGAGGAGGAGAGTGCTCATCGACCGCAATTCGCGCGCTGATCAA
GAAGCTGGTGACGGCAGAGAATCCCGCCAAGCCGCTAAGTGATAGCAAGATCGCGGATTTGCTGGCCGAACAGGGTATTA
TGGTGGCGAGACGCACGATCGCAAAGTACCGTGAATCCTTGTTGATCCCGCCATCCAATCAGCGCAAACGCCTGGTTTAG

Domains

Predicted by InterproScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(319-477)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

46.169

100

0.491

Multiple sequence alignment