Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   LCA_RS01345 Genome accession   NC_007576
Coordinates   280719..282518 (-) Length   599 a.a.
NCBI ID   WP_180752763.1    Uniprot ID   -
Organism   Latilactobacillus sakei subsp. sakei 23K     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 275719..287518
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCA_RS01320 (LCA_0280) - 275970..277511 (+) 1542 WP_011373990.1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase -
  LCA_RS01325 (LCA_0281) - 277531..278157 (+) 627 WP_157859368.1 hypothetical protein -
  LCA_RS01330 (LCA_0282) - 278307..279194 (+) 888 WP_011373992.1 metal ABC transporter solute-binding protein, Zn/Mn family -
  LCA_RS01335 (LCA_0283) - 279191..279871 (+) 681 WP_011373993.1 metal ABC transporter ATP-binding protein -
  LCA_RS01340 (LCA_0284) - 279906..280682 (+) 777 WP_011373994.1 metal ABC transporter permease -
  LCA_RS01345 (LCA_0285) pepF 280719..282518 (-) 1800 WP_180752763.1 oligoendopeptidase F Regulator
  LCA_RS01350 (LCA_0286) - 282718..283905 (+) 1188 WP_011373996.1 LCP family protein -
  LCA_RS01355 (LCA_0287) - 284050..285285 (+) 1236 WP_011373997.1 NupC/NupG family nucleoside CNT transporter -
  LCA_RS01365 (LCA_0288) - 285590..286321 (+) 732 WP_011373998.1 GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 599 a.a.        Molecular weight: 67670.48 Da        Isoelectric Point: 4.4716

>NTDB_id=25030 LCA_RS01345 WP_180752763.1 280719..282518(-) (pepF) [Latilactobacillus sakei subsp. sakei 23K]
MHKLPTRSEVPENLTWDLSTIFKNDSDFEAAVAALKQALPALEQYNQPFKTADQLVITIEQVLTLFRQLETVYVYASMKN
DQDTTNTTYQGYQAQVDALAADVSAAAAFLEPAILEIPVDQLTDWQTNEPALKSYQHFIQTITDSREHVLSGQEEALIAA
AGDIFGAASQTFSVLDNSDIQFPDVVDETGQTHQLSNGLYSQLLQSTDRQVRQDVFEALYSTYDQFKNTFATTLATEIKG
HNYLAQVHHYDSARQAALAPKAIPESVYTTLVDQVNQHLPLLHRYVKLRQKQLALPQLHMYDLYTPLLGKPALSYTYPQA
QTTAREALAVLGPEYTPIVDQIFDQRQIDVVENKGKRSGAYSGGAYDTNPFILLNWQDDLNNLYTLVHETGHSVHSYLTR
HNQPYVYGDYPIFVAEIASTTNENLLTEYLLKTQKDPKVQAYLLNYYLDGFKGTVFRQTQFAEFEHYIHDAAANGTPLTA
DFMSTYYADLNARYYGDAVAKDPQIALEWARIPHFYMNYYVYQYATGFAAATTLADQITTNQPGALDNYLTYLKNGSASY
PIETMQKAGVDMTNADYLERAFDVFEQRLDQLEALLADM

Nucleotide


Download         Length: 1800 bp        

>NTDB_id=25030 LCA_RS01345 WP_180752763.1 280719..282518(-) (pepF) [Latilactobacillus sakei subsp. sakei 23K]
ATTCACAAATTACCCACACGATCCGAAGTCCCTGAAAACTTAACCTGGGACCTCAGTACCATTTTCAAAAATGACTCAGA
TTTTGAGGCAGCTGTTGCGGCATTGAAACAAGCACTACCAGCACTTGAACAATATAACCAACCGTTTAAAACGGCTGATC
AACTCGTAATAACGATTGAACAAGTGCTAACGCTCTTTAGACAATTAGAAACGGTCTATGTTTACGCTAGCATGAAAAAC
GATCAGGATACAACTAATACCACTTATCAAGGTTATCAAGCTCAGGTCGATGCTTTAGCAGCTGACGTTTCAGCGGCGGC
CGCCTTTTTAGAACCCGCTATCCTCGAAATTCCCGTTGACCAATTAACTGACTGGCAGACCAATGAGCCAGCACTTAAAA
GTTATCAACATTTTATCCAGACCATCACTGATAGCCGCGAACATGTCTTATCAGGTCAAGAAGAGGCCCTAATTGCCGCT
GCTGGCGATATCTTTGGTGCCGCTAGTCAAACCTTCAGTGTTTTGGATAACTCAGATATTCAATTCCCAGACGTTGTCGA
TGAAACCGGCCAAACGCATCAATTATCAAACGGCCTCTATAGCCAATTGTTACAATCAACCGATCGCCAGGTCCGCCAAG
ACGTCTTTGAAGCACTCTACAGCACTTATGATCAGTTCAAAAATACATTTGCGACAACCCTTGCGACTGAGATCAAAGGG
CACAACTACCTCGCTCAAGTCCATCACTACGACAGTGCGCGCCAAGCAGCCCTCGCACCTAAAGCCATTCCTGAATCAGT
CTACACGACCTTAGTCGACCAAGTGAACCAACATTTGCCATTATTACATCGTTATGTTAAATTACGTCAAAAACAATTAG
CATTACCGCAATTGCATATGTACGACTTATACACACCTCTTTTGGGCAAACCCGCTTTGAGCTACACTTATCCACAAGCA
CAAACAACAGCGCGCGAAGCATTAGCCGTCTTAGGGCCTGAATACACCCCAATTGTGGACCAAATCTTCGATCAACGACA
AATTGATGTCGTTGAAAACAAAGGCAAGCGCAGTGGCGCTTACTCTGGCGGCGCATATGACACTAATCCGTTCATTCTCT
TGAATTGGCAAGACGATCTTAACAACTTATACACACTGGTCCACGAAACCGGCCACAGTGTCCACAGTTATTTAACACGT
CACAATCAACCTTACGTTTATGGCGATTATCCAATCTTCGTCGCTGAAATTGCGTCCACAACGAATGAAAATCTCCTTAC
TGAATATCTTTTGAAGACCCAAAAAGATCCCAAAGTTCAAGCCTACTTGTTGAACTACTACCTTGATGGTTTCAAAGGGA
CTGTCTTCCGTCAAACACAATTTGCCGAATTCGAACACTATATTCACGATGCAGCAGCCAATGGAACCCCTCTAACGGCT
GACTTCATGTCAACTTACTACGCTGACTTAAACGCTCGCTATTATGGCGATGCGGTCGCCAAGGATCCTCAAATCGCCTT
AGAATGGGCTCGGATTCCCCATTTTTACATGAACTATTACGTTTATCAATATGCAACTGGCTTTGCCGCTGCGACGACGC
TCGCTGATCAAATCACCACGAACCAACCGGGTGCACTCGACAATTATCTGACCTACCTCAAAAACGGGAGTGCCAGTTAC
CCAATTGAAACAATGCAAAAAGCCGGTGTGGATATGACGAACGCCGATTATCTTGAACGCGCCTTTGATGTTTTTGAACA
ACGCCTCGATCAATTAGAAGCATTACTTGCTGATATGTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(114-182)

Peptidase family M3 (Peptidase_M3)

(203-583)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

55.161

98.664

0.544

Multiple sequence alignment