Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   CRI72_RS24850 Genome accession   NZ_CP023815
Coordinates   4906647..4907276 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain IMT16316     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4901647..4912276
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CRI72_RS24835 helD 4901889..4903943 (-) 2055 WP_022645482.1 DNA helicase IV -
  CRI72_RS24840 yccF 4904066..4904512 (+) 447 WP_001261235.1 YccF domain-containing protein -
  CRI72_RS24845 yccS 4904522..4906684 (+) 2163 WP_000875041.1 YccS family putative transporter -
  CRI72_RS24850 sxy/tfoX 4906647..4907276 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  CRI72_RS24855 sulA 4907495..4908004 (+) 510 WP_000288704.1 SOS-induced cell division inhibitor SulA -
  CRI72_RS24865 ompA 4908361..4909401 (+) 1041 WP_022645481.1 porin OmpA -
  CRI72_RS24870 matP 4909478..4909930 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  CRI72_RS24875 ycbZ 4910116..4911876 (+) 1761 WP_000156473.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=250291 CRI72_RS24850 WP_000839153.1 4906647..4907276(-) (sxy/tfoX) [Escherichia coli strain IMT16316]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=250291 CRI72_RS24850 WP_000839153.1 4906647..4907276(-) (sxy/tfoX) [Escherichia coli strain IMT16316]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTTTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTAGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment