Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   DDT09_RS08090 Genome accession   NZ_CP029070
Coordinates   1570132..1570581 (+) Length   149 a.a.
NCBI ID   WP_003154472.1    Uniprot ID   A7Z4C2
Organism   Bacillus amyloliquefaciens strain ALB69     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1565132..1575581
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DDT09_RS08050 (DDT09_08050) ctaE 1565264..1565887 (+) 624 WP_003154482.1 cytochrome c oxidase subunit III -
  DDT09_RS08055 (DDT09_08055) ctaF 1565890..1566222 (+) 333 WP_007409686.1 cytochrome c oxidase subunit IVB -
  DDT09_RS08060 (DDT09_08060) ctaG 1566247..1567131 (+) 885 WP_109680514.1 cytochrome c oxidase assembly factor CtaG -
  DDT09_RS08065 (DDT09_08065) - 1567165..1567524 (-) 360 WP_007409688.1 YugN family protein -
  DDT09_RS08070 (DDT09_08070) - 1567664..1568107 (+) 444 WP_014417702.1 CBS domain-containing protein -
  DDT09_RS08075 (DDT09_08075) - 1568192..1569232 (+) 1041 WP_014417703.1 CAP domain-containing protein -
  DDT09_RS08080 (DDT09_08080) - 1569396..1569806 (+) 411 WP_014417704.1 YlbD family protein -
  DDT09_RS08085 (DDT09_08085) - 1569822..1570061 (+) 240 WP_003154475.1 YlbE-like family protein -
  DDT09_RS08090 (DDT09_08090) ylbF 1570132..1570581 (+) 450 WP_003154472.1 YlbF family regulator Regulator
  DDT09_RS08095 (DDT09_08095) - 1570640..1570912 (+) 273 WP_014417705.1 YlbG family protein -
  DDT09_RS08105 (DDT09_08105) rsmD 1571211..1571765 (+) 555 WP_014417706.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  DDT09_RS08110 (DDT09_08110) coaD 1571770..1572252 (+) 483 WP_014417707.1 pantetheine-phosphate adenylyltransferase -
  DDT09_RS08115 (DDT09_08115) ylbJ 1572271..1573497 (-) 1227 WP_061862164.1 sporulation integral membrane protein YlbJ -
  DDT09_RS08120 (DDT09_08120) - 1573677..1574456 (+) 780 WP_109680515.1 patatin family protein -
  DDT09_RS08125 (DDT09_08125) sepM 1574462..1575484 (+) 1023 WP_012117493.1 SepM family pheromone-processing serine protease Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16777.86 Da        Isoelectric Point: 4.8089

>NTDB_id=250232 DDT09_RS08090 WP_003154472.1 1570132..1570581(+) (ylbF) [Bacillus amyloliquefaciens strain ALB69]
MYATIESVKLQSEAEQLAGMILQSETAENYRDCYKRLREDEEAGRIIRSFMSVKEQYEDVQRFGKYHPDYREISRKMREM
KRELDLNDKVAEFKKAETELQSLLDEISIELGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGGCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=250232 DDT09_RS08090 WP_003154472.1 1570132..1570581(+) (ylbF) [Bacillus amyloliquefaciens strain ALB69]
ATGTATGCAACAATTGAGTCCGTCAAGCTTCAAAGTGAAGCGGAGCAGCTTGCCGGCATGATTCTGCAGTCTGAGACGGC
TGAAAATTACCGCGATTGTTACAAGCGTCTCCGTGAAGATGAAGAGGCAGGGCGGATCATTCGTTCTTTTATGAGCGTTA
AAGAGCAGTATGAGGATGTGCAGCGCTTTGGCAAATACCATCCTGATTATAGAGAGATTTCCCGCAAAATGAGAGAAATG
AAGCGGGAACTGGATTTAAACGATAAGGTGGCCGAATTTAAAAAAGCGGAGACTGAGCTTCAGTCGCTGCTTGACGAGAT
CAGCATTGAACTCGGAACGGCCGTCTCGGAGCATGTAAAAGTTCCGACGGGGAATCCTTATTTTGACGGCCTGTCATCCT
GCGGCGGCGGGTGCGGTTCCGGCGGCGGCTGCGGATGCAAAGTTTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z4C2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

87.919

100

0.879

Multiple sequence alignment