Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   DDT09_RS02885 Genome accession   NZ_CP029070
Coordinates   547570..548205 (+) Length   211 a.a.
NCBI ID   WP_014417035.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain ALB69     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 542570..553205
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DDT09_RS02850 (DDT09_02850) - 543551..543850 (-) 300 WP_014417026.1 spore coat protein -
  DDT09_RS02855 (DDT09_02855) - 543858..544064 (-) 207 WP_014417027.1 hypothetical protein -
  DDT09_RS02860 (DDT09_02860) - 544083..545219 (-) 1137 WP_061861900.1 zinc-dependent alcohol dehydrogenase -
  DDT09_RS02865 (DDT09_02865) - 545238..545606 (-) 369 WP_003156070.1 spore coat protein -
  DDT09_RS02870 (DDT09_02870) - 545624..545869 (-) 246 WP_015416919.1 hypothetical protein -
  DDT09_RS20155 - 546016..546303 (+) 288 WP_017419184.1 hypothetical protein -
  DDT09_RS02880 (DDT09_02880) - 546360..547577 (+) 1218 WP_025650280.1 sensor histidine kinase -
  DDT09_RS02885 (DDT09_02885) vraR 547570..548205 (+) 636 WP_014417035.1 response regulator transcription factor Regulator
  DDT09_RS02890 (DDT09_02890) - 548304..550457 (+) 2154 WP_025650281.1 MMPL family transporter -
  DDT09_RS02895 (DDT09_02895) - 550491..551213 (-) 723 WP_007409319.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  DDT09_RS02900 (DDT09_02900) abc-f 551354..552982 (-) 1629 WP_061861901.1 ABC-F type ribosomal protection protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23635.32 Da        Isoelectric Point: 5.1722

>NTDB_id=250197 DDT09_RS02885 WP_014417035.1 547570..548205(+) (vraR) [Bacillus amyloliquefaciens strain ALB69]
MYKVLIADDHLVVREGLKLLIETNDHYTITGEAENGKTAVRLAEELKPDVILMDLYMPEMSGLEAIKQIKEHSDVPIIIL
TTYNEDHLMIEGIESGANGYLLKDTSSETLFHTMDAAVRGEVLLQPDILRRFREMKMERANANETQLTEKEIIVLQAVAQ
GHKSKAIAFDLGISERTVKARLTSIYNKLGADSRTEAVTIAMQKGILKLNI

Nucleotide


Download         Length: 636 bp        

>NTDB_id=250197 DDT09_RS02885 WP_014417035.1 547570..548205(+) (vraR) [Bacillus amyloliquefaciens strain ALB69]
ATGTATAAAGTGTTAATAGCAGATGACCATCTTGTCGTCAGAGAAGGTCTGAAGCTTTTGATAGAAACAAATGACCATTA
CACCATAACGGGAGAAGCGGAAAACGGGAAAACCGCCGTCCGCCTCGCAGAGGAACTAAAGCCCGATGTCATTCTCATGG
ATCTGTACATGCCGGAAATGAGCGGGCTGGAAGCCATTAAACAGATAAAAGAGCATTCTGATGTGCCGATCATTATTTTG
ACGACCTATAATGAAGATCATCTGATGATAGAAGGCATCGAATCAGGCGCGAACGGTTATCTGCTGAAGGACACAAGCTC
AGAAACCTTATTTCATACGATGGATGCGGCGGTCAGGGGAGAAGTGCTTCTGCAGCCGGACATCTTGCGGCGTTTCCGGG
AAATGAAAATGGAACGGGCAAATGCCAATGAAACACAGCTGACGGAAAAGGAAATCATAGTTCTGCAAGCCGTTGCGCAA
GGACATAAAAGCAAAGCGATCGCCTTCGATTTAGGAATCTCAGAGCGGACGGTAAAAGCGAGATTAACATCGATTTATAA
CAAATTAGGCGCTGATTCGCGGACGGAAGCCGTCACCATTGCCATGCAAAAAGGCATTCTGAAACTGAATATATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(146-201)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

36.842

99.052

0.365