Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   SUDEN_RS02180 Genome accession   NC_007575
Coordinates   417232..419034 (-) Length   600 a.a.
NCBI ID   WP_011372053.1    Uniprot ID   Q30TI2
Organism   Sulfurimonas denitrificans DSM 1251     
Function   integration of short DNA fragment (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 412232..424034
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SUDEN_RS02165 (Suden_0415) - 413536..413910 (-) 375 WP_011372050.1 response regulator -
  SUDEN_RS02170 (Suden_0416) - 414019..416775 (-) 2757 WP_083756750.1 ATP-binding protein -
  SUDEN_RS02175 (Suden_0417) - 416781..417164 (-) 384 WP_011372052.1 PAS domain-containing protein -
  SUDEN_RS02180 (Suden_0418) uvrC 417232..419034 (-) 1803 WP_011372053.1 excinuclease ABC subunit UvrC Machinery gene
  SUDEN_RS11440 - 419024..419248 (-) 225 WP_238374817.1 hypothetical protein -
  SUDEN_RS11355 - 419447..419641 (+) 195 WP_162465561.1 hypothetical protein -
  SUDEN_RS02190 (Suden_0420) nadB 419638..421089 (+) 1452 WP_011372055.1 L-aspartate oxidase -
  SUDEN_RS02195 (Suden_0421) nhaD 421076..422455 (+) 1380 WP_083756751.1 sodium:proton antiporter NhaD -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 68958.69 Da        Isoelectric Point: 9.3799

>NTDB_id=25017 SUDEN_RS02180 WP_011372053.1 417232..419034(-) (uvrC) [Sulfurimonas denitrificans DSM 1251]
MTLRECIKQLPDSAGVYQYFDKDGHLLYIGKAKSLAKRVKSYFNFAPKFKPNSNLSSRISKMISQTHTLQYIVVNSEHDA
LILENSLIKQLMPKYNILLRDDKTYPYIYIDNSQKYPRFEMTRKIIKSSNIKYYGPFSVGARDILDSIYELCALVQKKGS
LTSKKLCLYHQINRCLGPCELHVSDEDYQRELDLAKELILNKKILIKKLQEKMFYYADNLRFEEATALRDRCERISRSEI
KSEIDFASSENYDIFVIASSQSRAVVVRIFMREGKIISSSHDYIQLHEGYDEDELYQRAIMGFYSHGKPPIIAPILVASE
FEGKDSIEEFLSTLFEKKADIKVPKTAKRKQLIDLALLNAAELLKNETKENQSGILDEIKKLFSLQRVPSRVETFDNSHM
SGVATVGAMSVYENGAFDKKSYRIYHLEARDEYAQMREMLLRRVESFLKNPPPDLWILDGGSTLLNLALSILESSGVNID
VIAIAKEKVDAKAHRAKGKAKDIIYSREDIFKLLDSDKRLHFVQKLRDEAHRCAINFHKKTKLKSDNESKLLTLKGISQA
KIIKLLKHFTTFDAIKEASVEELSTVLNLKDANIIKSSYI

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=25017 SUDEN_RS02180 WP_011372053.1 417232..419034(-) (uvrC) [Sulfurimonas denitrificans DSM 1251]
ATGACTCTTAGAGAGTGCATAAAGCAGCTTCCAGATTCTGCTGGAGTTTATCAATATTTTGACAAAGATGGACATCTTCT
CTACATTGGAAAAGCAAAAAGTTTGGCAAAGAGAGTAAAAAGCTACTTTAATTTTGCTCCCAAATTCAAACCAAATTCAA
ACCTCTCAAGTAGAATTTCTAAGATGATTTCTCAAACTCATACACTCCAATATATAGTTGTAAACTCCGAGCATGACGCA
CTTATCCTAGAAAATTCTCTTATCAAGCAACTTATGCCAAAATACAATATTTTGCTTCGTGATGATAAAACATATCCATA
CATCTACATAGACAACTCACAAAAATATCCCAGATTTGAGATGACAAGAAAAATCATCAAATCATCAAATATTAAATACT
ATGGTCCATTTTCAGTAGGTGCTCGTGATATTTTAGACTCTATTTATGAGCTATGTGCACTTGTGCAAAAAAAAGGCTCT
CTCACTTCAAAGAAACTCTGCCTTTACCATCAGATAAATCGATGTTTGGGTCCATGTGAACTACATGTAAGTGATGAAGA
TTACCAAAGAGAGTTAGATTTAGCAAAAGAGCTCATTTTAAATAAAAAAATATTGATTAAAAAGCTTCAAGAGAAGATGT
TTTATTATGCTGATAACTTAAGATTTGAAGAGGCGACGGCACTTCGTGACAGATGCGAGAGGATAAGTCGCTCAGAGATT
AAGAGCGAGATAGATTTTGCAAGTAGTGAAAATTATGATATTTTTGTCATTGCCTCCTCCCAAAGCAGAGCAGTAGTTGT
TAGAATTTTTATGAGAGAGGGCAAGATAATATCCTCTTCTCATGATTACATACAACTTCATGAGGGATATGATGAAGATG
AGCTTTATCAAAGGGCTATTATGGGGTTTTATTCTCATGGTAAACCCCCTATTATCGCCCCTATTTTAGTAGCCTCAGAG
TTTGAGGGCAAAGATAGCATAGAGGAGTTTTTAAGCACACTCTTTGAGAAAAAGGCAGATATAAAAGTTCCAAAAACTGC
AAAAAGAAAGCAACTTATAGATTTGGCACTGCTAAATGCCGCAGAACTCCTTAAAAATGAGACTAAAGAAAACCAGAGTG
GAATTTTAGATGAGATAAAAAAGCTTTTTTCTCTTCAAAGAGTCCCCTCTAGAGTAGAAACTTTTGACAACTCTCATATG
TCAGGAGTTGCAACTGTTGGTGCTATGTCTGTTTATGAAAATGGGGCGTTTGATAAAAAAAGTTATCGCATCTATCATCT
TGAAGCAAGAGATGAATACGCTCAAATGAGAGAGATGCTCCTTAGACGAGTTGAGAGTTTTCTAAAAAATCCTCCTCCTG
ATTTATGGATTTTAGATGGTGGAAGTACACTGCTAAATCTAGCCTTGTCTATCTTAGAGTCAAGTGGAGTAAATATAGAT
GTCATTGCAATTGCCAAAGAGAAAGTAGATGCAAAAGCTCATCGCGCAAAGGGTAAAGCAAAAGACATCATCTACTCAAG
GGAGGATATCTTTAAACTTTTAGATAGTGACAAGAGACTTCATTTTGTTCAAAAATTAAGAGATGAAGCTCACAGATGCG
CTATAAATTTTCATAAAAAAACAAAATTAAAAAGTGATAATGAGAGCAAGTTGCTCACATTAAAGGGTATTTCTCAAGCA
AAAATCATCAAACTCTTAAAACACTTTACTACATTTGATGCCATCAAAGAAGCTAGTGTTGAAGAACTTAGCACTGTGTT
AAACTTAAAAGATGCAAATATTATAAAGAGTAGTTACATATAA

Domains

Predicted by InterproScan.

GIY-YIG catalytic domain (GIY-YIG)

(15-96)

UvrB/uvrC motif (UVR)

(204-236)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(381-535)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q30TI2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Helicobacter pylori 26695

50.767

97.833

0.497

Multiple sequence alignment