Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   BAALB65_RS19415 Genome accession   NZ_CP029069
Coordinates   3895274..3895963 (-) Length   229 a.a.
NCBI ID   WP_021494677.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain ALB65     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3890274..3900963
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAALB65_RS19395 (BAALB65_19395) - 3891178..3891525 (-) 348 WP_004393256.1 YxeA family protein -
  BAALB65_RS19400 (BAALB65_19400) yxdM 3891539..3893407 (-) 1869 WP_109567323.1 ABC transporter permease YxdM -
  BAALB65_RS19405 (BAALB65_19405) yxdL 3893382..3894155 (-) 774 WP_007614823.1 ABC transporter ATP-binding protein YxdL -
  BAALB65_RS19410 (BAALB65_19410) yxdK 3894300..3895277 (-) 978 WP_021494678.1 two-component system sensor histidine kinase YxdK -
  BAALB65_RS19415 (BAALB65_19415) braR 3895274..3895963 (-) 690 WP_021494677.1 two-component system response regulator YxdJ Regulator
  BAALB65_RS19420 (BAALB65_19420) fba 3896070..3896942 (-) 873 WP_029972982.1 class II fructose-1,6-bisphosphate aldolase -
  BAALB65_RS19425 (BAALB65_19425) iolI 3896945..3897787 (-) 843 WP_007407832.1 2-keto-myo-inositol isomerase -
  BAALB65_RS19430 (BAALB65_19430) - 3897875..3898744 (-) 870 WP_017418544.1 sugar phosphate isomerase/epimerase -
  BAALB65_RS19435 (BAALB65_19435) - 3898764..3899798 (-) 1035 WP_014419289.1 Gfo/Idh/MocA family oxidoreductase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26561.26 Da        Isoelectric Point: 4.8564

>NTDB_id=250164 BAALB65_RS19415 WP_021494677.1 3895274..3895963(-) (braR) [Bacillus amyloliquefaciens strain ALB65]
MNKIMIVEDSEDIRGLLQNYLEKYGYQTVAAADFTAVLDVFLREKPDVVLLDINLPSYDGYYWCRQIRQHSTSPIIFISA
RSGEMDQVMAIENGGDDYIEKPFSYDIVLAKIKSQIRRAYGEYAAKQGEKVVEYAGVQLFVERFELRFQDEKSELSKKES
KLLEVLLERGEKVTSRDRLMEKTWDTDVFVDDNTLNVYITRLRKKLRELNAPVSIESVRGEGYQLRALS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=250164 BAALB65_RS19415 WP_021494677.1 3895274..3895963(-) (braR) [Bacillus amyloliquefaciens strain ALB65]
TTGAATAAAATCATGATTGTGGAAGATAGTGAAGACATTCGCGGACTATTGCAGAATTACCTTGAAAAATACGGATATCA
AACCGTGGCCGCCGCGGATTTCACGGCTGTTCTTGATGTTTTTTTGCGGGAAAAGCCTGATGTGGTGCTGCTTGATATCA
ACCTGCCGTCTTATGACGGCTATTATTGGTGCCGGCAGATCCGCCAGCATTCTACAAGCCCGATCATTTTTATCTCAGCC
AGAAGCGGGGAAATGGATCAGGTGATGGCGATTGAAAACGGCGGAGATGATTATATCGAAAAACCGTTTTCTTATGATAT
TGTGCTGGCGAAAATCAAAAGCCAGATCCGCAGGGCATACGGAGAGTACGCCGCCAAGCAGGGAGAGAAAGTGGTTGAAT
ATGCCGGTGTGCAGCTATTTGTGGAACGGTTTGAACTGCGCTTTCAGGACGAAAAAAGCGAGCTTTCTAAGAAAGAAAGC
AAGCTTTTGGAAGTGCTGCTGGAGCGGGGAGAAAAGGTGACGAGTCGGGACCGTCTCATGGAAAAGACGTGGGACACCGA
CGTTTTCGTCGATGATAATACGCTTAACGTGTATATCACGCGGCTCAGAAAAAAACTGCGGGAGCTGAATGCGCCTGTTT
CCATTGAATCGGTGCGGGGCGAAGGCTACCAGCTGAGGGCGCTGTCATGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-112)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

40.807

97.38

0.397