Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   BAALB65_RS17995 Genome accession   NZ_CP029069
Coordinates   3619150..3620280 (-) Length   376 a.a.
NCBI ID   WP_017418744.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain ALB65     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3614150..3625280
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAALB65_RS17965 (BAALB65_17965) - 3614992..3615396 (-) 405 WP_014419089.1 Rrf2 family transcriptional regulator -
  BAALB65_RS17970 (BAALB65_17970) ureC 3615538..3617247 (-) 1710 WP_095060257.1 urease subunit alpha -
  BAALB65_RS17975 (BAALB65_17975) ureB 3617244..3617618 (-) 375 WP_003151199.1 urease subunit beta -
  BAALB65_RS17980 (BAALB65_17980) ureA 3617615..3617932 (-) 318 WP_003151198.1 urease subunit gamma -
  BAALB65_RS17985 (BAALB65_17985) - 3618286..3618474 (-) 189 WP_032863869.1 CsbD family protein -
  BAALB65_RS17990 (BAALB65_17990) - 3618549..3619028 (-) 480 WP_007407583.1 hypothetical protein -
  BAALB65_RS17995 (BAALB65_17995) rapC 3619150..3620280 (-) 1131 WP_017418744.1 tetratricopeptide repeat protein Regulator
  BAALB65_RS18000 (BAALB65_18000) moaA 3620471..3621496 (-) 1026 WP_012118655.1 GTP 3',8-cyclase MoaA -
  BAALB65_RS18005 (BAALB65_18005) fdhD 3621514..3622302 (-) 789 WP_017418742.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  BAALB65_RS20340 - 3622397..3622561 (-) 165 WP_007407587.1 hypothetical protein -
  BAALB65_RS18010 (BAALB65_18010) - 3622648..3623328 (-) 681 WP_204082500.1 VWA domain-containing protein -
  BAALB65_RS18015 (BAALB65_18015) - 3623638..3624324 (-) 687 WP_109567270.1 VWA domain-containing protein -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 44861.96 Da        Isoelectric Point: 5.4375

>NTDB_id=250158 BAALB65_RS17995 WP_017418744.1 3619150..3620280(-) (rapC) [Bacillus amyloliquefaciens strain ALB65]
MTAYEIPSSQVGVKINKWYKHILAFQAADAIKLKEEIDEDIQRMEEDQLLLLYYQLISYRHHIMLDYVKPECTEQSQIQY
SELQKTIESTDSISGLSEYYFHLFRGMYEFDHNNYVAAISFYRKAEKLLSFVEDDIERAEFHFKMSEVFYVMKQTHFSMN
HGIQALDTYMKHDFYRVRRIQCHFVISGNYIDCKNYDKALEHLDEALRLSLLEGQPRLIGSSLYNLGNCYSEKRDLDEAA
RYFRKAVPVFEEHQLEQLPKALFSLTHTLFRLHDDQAALTYYERGVMIAKERGDRFSLEKYKFLQALYLESLNMDLIHEV
FDYMNEKSLYVYIEDFALEAAIYTSGHGQYKEAAYFYEKAIRMRENIQKEQCLYDI

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=250158 BAALB65_RS17995 WP_017418744.1 3619150..3620280(-) (rapC) [Bacillus amyloliquefaciens strain ALB65]
ATGACCGCATACGAGATTCCGTCATCTCAAGTTGGAGTTAAGATCAACAAATGGTACAAGCACATTTTAGCGTTTCAAGC
GGCTGATGCCATAAAGCTGAAAGAGGAAATTGATGAGGATATACAACGTATGGAGGAAGACCAGCTGCTGCTGTTATATT
ATCAGCTGATCAGCTACCGCCATCATATTATGCTTGATTACGTCAAGCCGGAATGCACCGAACAATCACAGATTCAGTAC
AGCGAGCTGCAAAAGACGATCGAAAGCACGGACAGCATATCGGGACTGTCTGAGTATTATTTCCATTTGTTCAGAGGGAT
GTATGAATTCGATCACAATAACTATGTTGCGGCTATTTCTTTTTACCGGAAAGCGGAAAAACTCCTTTCATTTGTCGAGG
ATGATATAGAGAGGGCGGAATTCCATTTCAAGATGTCTGAAGTGTTTTATGTCATGAAGCAGACTCATTTTTCCATGAAT
CACGGGATTCAGGCGCTGGATACGTATATGAAACACGATTTCTACAGAGTGCGGAGAATTCAATGCCATTTCGTCATCTC
AGGAAACTACATCGACTGCAAAAACTACGACAAAGCGCTTGAACATTTAGACGAAGCCCTCCGCCTTTCTTTGCTTGAAG
GACAGCCCCGCCTGATCGGGTCTTCGCTTTACAATCTGGGGAATTGTTATTCTGAAAAGCGCGATCTGGATGAAGCGGCC
CGGTACTTTAGAAAAGCGGTTCCCGTTTTTGAAGAGCATCAGCTTGAACAGCTTCCGAAGGCGCTGTTCAGTTTAACGCA
CACCCTTTTCAGGCTGCATGATGACCAAGCGGCCCTTACCTATTATGAAAGAGGGGTCATGATCGCGAAAGAACGGGGCG
ACCGATTCAGTTTAGAGAAGTATAAGTTTTTACAAGCGCTTTATTTGGAGTCACTCAATATGGATTTAATCCATGAAGTG
TTTGACTATATGAATGAAAAATCGCTGTATGTGTATATTGAAGATTTCGCCTTGGAGGCCGCCATTTACACAAGCGGACA
TGGGCAATATAAAGAAGCGGCGTATTTTTATGAAAAAGCGATTCGCATGAGAGAAAACATTCAAAAAGAACAGTGTTTAT
ACGATATATAA

Domains

Predicted by InterProScan.

Tetratricopeptide repeat (TPR_12)

(192-251)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)

Anaphase-promoting complex subunit 5 (ANAPC5)

(314-373)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

41.842

100

0.423
  rapF Bacillus subtilis subsp. subtilis str. 168

40

99.734

0.399