Detailed information NTG0250140

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: BAALB65_RS15785
• Genome accession: NZ_CP029069
• Coordinates: 3163030..3164160 (-)
• Length: 376 a.a.
• NCBI ID: WP_094296264.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain ALB65
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3158030..3169160

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BAALB65_RS15765 (BAALB65_15765)	-	3158136..3158987 (-)	852	WP_014418802.1	DUF72 domain-containing protein	-
BAALB65_RS15770 (BAALB65_15770)	-	3159014..3159367 (-)	354	WP_007408736.1	hypothetical protein	-
BAALB65_RS15775 (BAALB65_15775)	-	3159440..3160804 (-)	1365	WP_014418803.1	allantoinase	-
BAALB65_RS15780 (BAALB65_15780)	-	3160984..3162579 (+)	1596	WP_021493985.1	PucR family transcriptional regulator	-
BAALB65_RS20605	-	3162767..3162895 (-)	129	WP_014721768.1	hypothetical protein	-
BAALB65_RS15785 (BAALB65_15785)	rapC	3163030..3164160 (-)	1131	WP_094296264.1	Rap family tetratricopeptide repeat protein	Regulator
BAALB65_RS20505 (BAALB65_15790)	-	3164295..3164474 (-)	180	WP_021493988.1	hypothetical protein	-
BAALB65_RS15795 (BAALB65_15795)	-	3164599..3165732 (-)	1134	WP_109567177.1	hypothetical protein	-
BAALB65_RS15800 (BAALB65_15800)	-	3165790..3166986 (-)	1197	WP_109567178.1	MFS transporter	-
BAALB65_RS15805 (BAALB65_15805)	-	3167108..3168361 (-)	1254	WP_109567179.1	alanine--glyoxylate aminotransferase family protein	-

Sequence

Protein

• Length: 376 a.a.
• Molecular weight: 44455.93 Da
• Isoelectric Point: 6.5116

>NTDB_id=250140 BAALB65_RS15785 WP_094296264.1 3163030..3164160(-) (rapC) [Bacillus amyloliquefaciens strain ALB65]
MSSVLPSSEVGVKINEWYKMIRQFSVPDAEILKAEVEQEINEMEEDEYLLIYYTLMKFRHQLMLDYLEPVTTRVRLTIDE
LLEKIEASNKGISGLLFYYSLFFRGMYEFDQKQYVKAIGFYKEAEKQLVHVHDEIERAEFHFKLAEAYYGMKQSHVSMHH
VKQALDIYDQYELYKVRKIQCLFVISGNYVDFKRYEKSLPHLEKALELSKQVNNNERLLSSAYYNIGKNYGDLEEYNKAE
IYLKKAAEISEKYKLGNLPHSLFTYAKLLFKQGKTTEAIQISKKGLSSAIFQGDKLFESLQKYLEALYINAIDQMGIKKT
IDYLEKNKNYSYVEDIALDTAAVYAESKQYDKSYFYHQKMIQTQKQIQRGECLYEF

Nucleotide

• Length: 1131 bp

>NTDB_id=250140 BAALB65_RS15785 WP_094296264.1 3163030..3164160(-) (rapC) [Bacillus amyloliquefaciens strain ALB65]
GTGAGTTCTGTTTTACCATCATCGGAGGTTGGCGTTAAGATTAATGAATGGTACAAAATGATACGTCAGTTCAGTGTTCC
GGATGCGGAGATTTTGAAAGCGGAAGTGGAACAAGAAATCAATGAGATGGAAGAAGACGAGTATCTACTGATTTACTACA
CCCTCATGAAATTCCGCCATCAGCTTATGCTGGATTATTTAGAACCGGTGACTACCCGCGTGAGACTGACAATTGACGAG
CTGCTGGAAAAAATTGAAGCATCAAATAAAGGAATTTCCGGCCTGCTGTTCTATTATTCTTTATTTTTCCGCGGCATGTA
TGAATTTGATCAAAAGCAGTATGTAAAGGCGATCGGCTTTTATAAAGAGGCTGAAAAACAACTCGTTCATGTGCATGATG
AAATTGAGAGAGCGGAGTTTCATTTTAAACTGGCTGAAGCATATTACGGTATGAAACAAAGCCACGTCTCCATGCATCAC
GTAAAGCAAGCGCTCGATATTTACGATCAGTATGAGTTGTATAAGGTCCGGAAAATTCAATGTCTATTTGTCATATCAGG
GAACTATGTAGACTTTAAACGTTATGAAAAAAGCTTGCCGCATTTAGAGAAAGCTTTAGAGTTGTCGAAACAAGTAAACA
ATAATGAAAGGCTGCTCAGTTCTGCTTATTACAACATAGGAAAGAATTACGGAGACTTAGAAGAATACAATAAAGCTGAA
ATCTACTTAAAAAAAGCAGCGGAGATATCTGAGAAGTATAAATTGGGTAACCTTCCGCATTCCTTGTTTACATACGCAAA
GCTTCTATTTAAACAAGGGAAAACAACCGAGGCGATTCAAATCAGCAAAAAGGGACTTTCATCAGCGATATTTCAAGGAG
ATAAGCTGTTTGAATCTCTGCAAAAATATTTGGAGGCTTTATATATTAATGCAATAGACCAAATGGGAATCAAAAAAACA
ATTGATTACCTTGAGAAAAATAAAAACTATTCGTATGTAGAAGATATTGCTCTTGATACGGCTGCTGTTTATGCAGAATC
AAAGCAATATGACAAGTCTTATTTTTATCATCAAAAAATGATTCAAACGCAAAAACAAATTCAGAGGGGAGAGTGCCTGT
ATGAATTTTAG

Domains

Predicted by InterProScan.

• Tetratricopeptide repeat (TPR_12) (193-252)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	44.327	100	0.447
rapF	Bacillus subtilis subsp. subtilis str. 168	40.263	100	0.407