Detailed information NTG0250131

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: BAALB65_RS14075
• Genome accession: NZ_CP029069
• Coordinates: 2846889..2848022 (-)
• Length: 377 a.a.
• NCBI ID: WP_109567114.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain ALB65
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 2841889..2853022

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BAALB65_RS14060 (BAALB65_14060)	mdh	2842495..2843433 (-)	939	WP_003152455.1	malate dehydrogenase	-
BAALB65_RS14065 (BAALB65_14065)	icd	2843479..2844750 (-)	1272	WP_003152454.1	NADP-dependent isocitrate dehydrogenase	-
BAALB65_RS14070 (BAALB65_14070)	citZ	2844911..2846029 (-)	1119	WP_003152453.1	citrate synthase	-
BAALB65_RS20325	-	2846747..2846899 (-)	153	WP_017418344.1	hypothetical protein	-
BAALB65_RS14075 (BAALB65_14075)	rapC	2846889..2848022 (-)	1134	WP_109567114.1	Rap family tetratricopeptide repeat protein	Regulator
BAALB65_RS14080 (BAALB65_14080)	-	2848315..2848752 (-)	438	WP_014418618.1	hypothetical protein	-
BAALB65_RS14085 (BAALB65_14085)	-	2848909..2849037 (-)	129	Protein_2708	peptidoglycan-binding domain-containing protein	-
BAALB65_RS14090 (BAALB65_14090)	-	2849227..2849637 (-)	411	WP_077722693.1	YjdF family protein	-
BAALB65_RS14100 (BAALB65_14100)	-	2850060..2850524 (-)	465	WP_003152447.1	DUF441 domain-containing protein	-
BAALB65_RS14105 (BAALB65_14105)	ytvI	2850622..2851737 (+)	1116	WP_109567115.1	sporulation integral membrane protein YtvI	-
BAALB65_RS14110 (BAALB65_14110)	-	2851769..2852152 (-)	384	WP_012118168.1	FxsA family protein	-

Sequence

Protein

• Length: 377 a.a.
• Molecular weight: 44825.66 Da
• Isoelectric Point: 6.1995

>NTDB_id=250131 BAALB65_RS14075 WP_109567114.1 2846889..2848022(-) (rapC) [Bacillus amyloliquefaciens strain ALB65]
MDQVLPSSHVGVKINEWYKMIRQFSVPDAEILKAEVEHEIKEMEEDEYLLIYYSLMTFRHQLMLDYLNPEIKYRTDRPTT
TELLEKIEKPQKTLTGLLKYYSHFFRGMYEFDQKQYVEAINFYRKAEMEIHHVSDEIEQAEFHFKLAEAYYNMKQTHVSM
HHILKALEIYDRNPLYTVRKIQSLFVIVGNYLDFKHYEKGLQHLEEALKLSQEFGHKRLISSALYNLGESYHYMGQEEKA
EAYLRQAIVIGEEMKLRTLPHSYYSLSIVLFKQKKTAAAGQALKEGLKTAVKYDDNLFCLLTEFLYVLFAKPINKDSLVE
ILSKLENIHMYSYVEELTLLTANFFKGMKDFEMATIFYDKMVESQLQIQRGDCLYEY

Nucleotide

• Length: 1134 bp

>NTDB_id=250131 BAALB65_RS14075 WP_109567114.1 2846889..2848022(-) (rapC) [Bacillus amyloliquefaciens strain ALB65]
ATGGACCAGGTATTACCGTCTTCACATGTAGGCGTTAAAATTAACGAGTGGTACAAGATGATTCGTCAATTTAGTGTGCC
AGACGCGGAAATTTTAAAAGCCGAAGTGGAACACGAAATAAAAGAAATGGAAGAAGACGAATATTTACTTATTTATTACT
CTCTCATGACTTTTCGTCATCAACTTATGCTAGATTATTTAAACCCAGAAATAAAGTATAGGACTGATAGGCCAACCACC
ACAGAACTACTTGAGAAGATTGAGAAACCACAAAAAACACTTACCGGCCTCTTAAAATATTACTCACATTTTTTTCGCGG
AATGTACGAATTTGATCAGAAGCAGTATGTAGAAGCAATTAATTTTTATCGTAAAGCAGAGATGGAAATTCATCATGTCT
CTGATGAAATAGAACAAGCTGAGTTTCATTTTAAGTTGGCAGAGGCTTATTATAATATGAAACAAACGCACGTATCCATG
CATCATATTCTAAAAGCGTTAGAAATTTATGATCGAAACCCGCTTTATACCGTCCGAAAAATTCAAAGTTTATTTGTAAT
TGTGGGTAATTATCTTGATTTTAAACATTACGAAAAAGGATTACAGCATCTTGAGGAAGCCTTGAAGCTTTCGCAAGAAT
TTGGTCATAAAAGGTTGATTTCCTCTGCTCTTTATAATTTGGGTGAAAGTTATCACTACATGGGACAAGAAGAAAAGGCC
GAAGCGTATTTGAGACAAGCAATTGTGATTGGTGAAGAAATGAAATTGAGAACTCTGCCCCATTCATATTATTCACTTTC
CATAGTATTATTTAAGCAAAAGAAAACAGCCGCGGCAGGCCAAGCTTTAAAAGAAGGTTTAAAAACAGCAGTAAAATATG
ACGACAATTTGTTTTGCTTATTAACAGAGTTTTTATATGTTTTATTTGCTAAACCGATTAACAAAGACAGCCTTGTAGAA
ATTTTAAGTAAGCTTGAAAATATTCATATGTATTCGTATGTCGAAGAGTTGACACTTTTAACAGCAAACTTTTTCAAAGG
AATGAAGGACTTTGAAATGGCTACAATTTTTTATGATAAGATGGTGGAGTCTCAACTTCAAATACAGCGGGGGGATTGTT
TGTATGAATATTAA

Domains

Predicted by InterProScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

• Tetratricopeptide repeat (TPR_12) (197-248)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	42.133	99.469	0.419
rapF	Bacillus subtilis subsp. subtilis str. 168	38.889	100	0.39