Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   BAALB65_RS09075 Genome accession   NZ_CP029069
Coordinates   1761804..1762235 (+) Length   143 a.a.
NCBI ID   WP_109566943.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain ALB65     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1756804..1767235
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAALB65_RS09055 (BAALB65_09055) spoVS 1757374..1757634 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -
  BAALB65_RS09060 (BAALB65_09060) tdh 1757892..1758938 (+) 1047 WP_106067965.1 L-threonine 3-dehydrogenase -
  BAALB65_RS09065 (BAALB65_09065) - 1758951..1760129 (+) 1179 WP_029325912.1 glycine C-acetyltransferase -
  BAALB65_RS09070 (BAALB65_09070) miaB 1760272..1761801 (+) 1530 WP_003154116.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  BAALB65_RS09075 (BAALB65_09075) ymcA 1761804..1762235 (+) 432 WP_109566943.1 RicAFT regulatory complex protein RicA family protein Regulator
  BAALB65_RS09080 (BAALB65_09080) cotE 1762488..1763033 (+) 546 WP_003154111.1 outer spore coat protein CotE -
  BAALB65_RS09085 (BAALB65_09085) hexA 1763152..1765737 (+) 2586 WP_031303980.1 DNA mismatch repair protein MutS Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16081.23 Da        Isoelectric Point: 5.2782

>NTDB_id=250090 BAALB65_RS09075 WP_109566943.1 1761804..1762235(+) (ymcA) [Bacillus amyloliquefaciens strain ALB65]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENEKVSAIINQIKTLQKQAVNLKHYEKLEALKQVESKINALQE
ELEGIPIIQEFRDSQIEVNDLLQLVAHTISNQVTNEIITSTGGNLLTGETGSKVKHSNNSCSI

Nucleotide


Download         Length: 432 bp        

>NTDB_id=250090 BAALB65_RS09075 WP_109566943.1 1761804..1762235(+) (ymcA) [Bacillus amyloliquefaciens strain ALB65]
ATGACGCTTTACTCTAAGAAAGACATTGTACAGCAGGCTAGGAACCTTGCGAAAATGATTTCTGAAACAGAAGAAGTTGA
TTTTTTCAAACGCGCTGAGGCGCAGATTAACGAAAATGAAAAAGTCTCTGCGATTATTAATCAGATTAAAACCCTGCAAA
AGCAAGCCGTTAACCTGAAGCACTACGAAAAGCTTGAAGCGCTGAAACAAGTGGAAAGTAAAATTAACGCCCTGCAGGAA
GAGCTTGAAGGGATTCCGATCATTCAGGAATTCAGAGATTCCCAGATTGAGGTCAATGACCTTCTTCAGCTTGTCGCACA
TACGATCTCAAATCAGGTGACAAACGAAATCATTACATCTACCGGAGGCAACCTGCTGACGGGAGAAACCGGTTCAAAAG
TAAAACATTCGAATAACAGCTGTTCTATTTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

90.909

100

0.909