Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilZ   Type   Machinery gene
Locus tag   PFL01_RS20830 Genome accession   NC_007492
Coordinates   4688363..4688719 (-) Length   118 a.a.
NCBI ID   WP_011335430.1    Uniprot ID   -
Organism   Pseudomonas fluorescens Pf0-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4683363..4693719
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PFL01_RS20805 (Pfl01_4145) - 4684171..4684731 (-) 561 WP_011335428.1 DUF1285 domain-containing protein -
  PFL01_RS20810 (Pfl01_4146) - 4684747..4685352 (-) 606 WP_007950810.1 DUF4823 domain-containing protein -
  PFL01_RS20815 (Pfl01_4147) - 4685475..4686443 (-) 969 WP_007950807.1 GTP 3',8-cyclase MoaA -
  PFL01_RS20820 (Pfl01_4148) - 4686582..4687220 (-) 639 WP_007950805.1 TetR/AcrR family transcriptional regulator -
  PFL01_RS20825 (Pfl01_4149) - 4687562..4688347 (-) 786 WP_011335429.1 TatD family hydrolase -
  PFL01_RS20830 (Pfl01_4150) pilZ 4688363..4688719 (-) 357 WP_011335430.1 PilZ domain-containing protein Machinery gene
  PFL01_RS20835 (Pfl01_4151) - 4688762..4689745 (-) 984 WP_011335431.1 DNA polymerase III subunit delta' -
  PFL01_RS20840 (Pfl01_4152) tmk 4689738..4690370 (-) 633 WP_011335432.1 dTMP kinase -
  PFL01_RS20845 (Pfl01_4153) mltG 4690390..4691571 (-) 1182 WP_011335433.1 endolytic transglycosylase MltG -
  PFL01_RS20850 (Pfl01_4154) pabC 4691575..4692390 (-) 816 WP_011335434.1 aminodeoxychorismate lyase -
  PFL01_RS20855 (Pfl01_4155) fabF 4692390..4693634 (-) 1245 WP_041475396.1 beta-ketoacyl-ACP synthase II -

Sequence

Protein


Download         Length: 118 a.a.        Molecular weight: 12759.68 Da        Isoelectric Point: 9.8518

>NTDB_id=25009 PFL01_RS20830 WP_011335430.1 4688363..4688719(-) (pilZ) [Pseudomonas fluorescens Pf0-1]
MNEPVSPGPRNGILSLTIKDKSVLYAAYMPFIKNGGLFIPTNKSYKLGDEVFMLLNLMDESEKIPVAGKVAWITPKGAQG
NRAAGVGVQFNDGDNTARSRIETHLAGALKSDRPTHTM

Nucleotide


Download         Length: 357 bp        

>NTDB_id=25009 PFL01_RS20830 WP_011335430.1 4688363..4688719(-) (pilZ) [Pseudomonas fluorescens Pf0-1]
ATGAATGAACCTGTCAGCCCGGGGCCGCGCAACGGCATCTTGTCCCTGACCATCAAGGACAAGTCGGTCCTTTACGCCGC
CTACATGCCGTTCATCAAGAACGGTGGCCTGTTCATCCCGACCAACAAGAGCTACAAGTTGGGCGACGAGGTGTTCATGC
TGCTGAACCTGATGGACGAGTCGGAGAAGATTCCGGTGGCCGGCAAAGTGGCCTGGATCACCCCCAAAGGCGCCCAGGGC
AACCGCGCGGCCGGCGTCGGCGTGCAATTCAACGATGGCGACAACACTGCGCGCAGTCGCATCGAAACTCATCTGGCCGG
AGCCCTGAAATCCGACCGTCCCACTCATACGATGTAA

Domains

Predicted by InterProScan.

PilZ domain (PilZ)

(17-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilZ Legionella pneumophila str. Paris

47.222

91.525

0.432
  pilZ Legionella pneumophila strain ERS1305867

47.222

91.525

0.432

Multiple sequence alignment