Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   PFL01_RS20290 Genome accession   NC_007492
Coordinates   4566853..4567188 (-) Length   111 a.a.
NCBI ID   WP_011335337.1    Uniprot ID   -
Organism   Pseudomonas fluorescens Pf0-1     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4561853..4572188
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PFL01_RS29405 (Pfl01_4035) - 4562740..4562907 (+) 168 WP_007950938.1 DUF2897 family protein -
  PFL01_RS20270 (Pfl01_4036) - 4562954..4563805 (-) 852 WP_011335332.1 urea carboxylase-associated family protein -
  PFL01_RS20275 (Pfl01_4037) - 4563981..4564538 (+) 558 WP_011335333.1 TetR/AcrR family transcriptional regulator -
  PFL01_RS20280 (Pfl01_4038) fabF 4564535..4565809 (-) 1275 Protein_4067 beta-ketoacyl-ACP synthase II -
  PFL01_RS20285 (Pfl01_4040) - 4565842..4566636 (-) 795 WP_011335336.1 SDR family NAD(P)-dependent oxidoreductase -
  PFL01_RS20290 (Pfl01_4041) comEA/comE1 4566853..4567188 (-) 336 WP_011335337.1 ComEA family DNA-binding protein Machinery gene
  PFL01_RS20295 (Pfl01_4042) - 4567333..4568409 (-) 1077 WP_011335338.1 glycosyltransferase -
  PFL01_RS20300 (Pfl01_4043) - 4568406..4569365 (-) 960 WP_011335339.1 glycosyltransferase family 2 protein -
  PFL01_RS20305 (Pfl01_4044) - 4569358..4569825 (-) 468 WP_011335340.1 MaoC family dehydratase -
  PFL01_RS20310 (Pfl01_4045) - 4569822..4570490 (-) 669 WP_011335341.1 acetyltransferase -
  PFL01_RS20315 (Pfl01_4046) - 4570517..4571599 (-) 1083 WP_011335342.1 DegT/DnrJ/EryC1/StrS family aminotransferase -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 11569.15 Da        Isoelectric Point: 4.8146

>NTDB_id=25007 PFL01_RS20290 WP_011335337.1 4566853..4567188(-) (comEA/comE1) [Pseudomonas fluorescens Pf0-1]
MRTGYFYSLLFAFLASASIAAVAAPGVSSENIRAPLVLDAAASSQSEKVDLNGADAATLQKELAGVGEAKAKAIVAYREA
NGPFASVDELLEVKGIGKAILDRNRDKLEVN

Nucleotide


Download         Length: 336 bp        

>NTDB_id=25007 PFL01_RS20290 WP_011335337.1 4566853..4567188(-) (comEA/comE1) [Pseudomonas fluorescens Pf0-1]
ATGCGTACCGGTTATTTCTACTCGTTGCTCTTCGCTTTTCTCGCCAGCGCCTCGATTGCCGCCGTTGCGGCGCCAGGGGT
GTCCTCCGAGAACATCAGGGCGCCATTGGTGCTTGACGCTGCCGCTTCATCCCAAAGCGAAAAGGTCGATCTCAACGGTG
CCGATGCAGCGACGCTGCAAAAGGAGTTGGCCGGGGTGGGAGAGGCGAAGGCAAAAGCGATTGTTGCCTATCGTGAGGCT
AATGGACCTTTTGCATCGGTGGACGAACTGCTTGAAGTGAAAGGTATCGGCAAGGCGATCCTCGATCGCAATCGCGACAA
GCTGGAAGTGAACTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(45-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.952

94.595

0.387

Multiple sequence alignment