Detailed information    

insolico Bioinformatically predicted

Overview


Name   coiA   Type   Machinery gene
Locus tag   BAALB65_RS06235 Genome accession   NZ_CP029069
Coordinates   1181840..1183000 (+) Length   386 a.a.
NCBI ID   WP_109566855.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain ALB65     
Function   homologous recombination; DNA uptake (predicted from homology)   
Homologous recombination DNA binding and uptake

Genomic Context


Location: 1176840..1188000
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAALB65_RS06210 (BAALB65_06210) - 1177585..1178772 (+) 1188 WP_109566854.1 putative glycoside hydrolase -
  BAALB65_RS06215 (BAALB65_06215) - 1178890..1179468 (+) 579 WP_007409110.1 GNAT family N-acetyltransferase -
  BAALB65_RS06220 (BAALB65_06220) spx 1179647..1180042 (+) 396 WP_003155034.1 transcriptional regulator Spx -
  BAALB65_RS06225 (BAALB65_06225) - 1180100..1180756 (-) 657 WP_014417421.1 TerC family protein -
  BAALB65_RS06230 (BAALB65_06230) mecA 1181032..1181688 (+) 657 WP_003155032.1 adaptor protein MecA Regulator
  BAALB65_RS06235 (BAALB65_06235) coiA 1181840..1183000 (+) 1161 WP_109566855.1 competence protein CoiA family protein Machinery gene
  BAALB65_RS06240 (BAALB65_06240) pepF 1183228..1185057 (+) 1830 WP_007409107.1 oligoendopeptidase F Regulator
  BAALB65_RS20275 - 1185094..1185261 (-) 168 WP_003155026.1 hypothetical protein -
  BAALB65_RS06245 (BAALB65_06245) spxH 1185547..1186449 (-) 903 WP_039251990.1 protease adaptor protein SpxH -
  BAALB65_RS06250 (BAALB65_06250) - 1186446..1186844 (-) 399 WP_109566856.1 thiol management oxidoreductase -
  BAALB65_RS06255 (BAALB65_06255) - 1187073..1187759 (-) 687 WP_109566857.1 lytic transglycosylase domain-containing protein -

Sequence


Protein


Download         Length: 386 a.a.        Molecular weight: 44444.27 Da        Isoelectric Point: 10.0426

>NTDB_id=250067 BAALB65_RS06235 WP_109566855.1 1181840..1183000(+) (coiA) [Bacillus amyloliquefaciens strain ALB65]
MFSAVTADGRLIQLAGSYSKEKAAELRKKSWFCPVCKSELDIKLGREKLPHFAHKKSRLCPGESEPESEYHLEGKRQLFL
WLKTQGCSVSLEPYLTSAGQRPDLTAVSGEERLAFEFQCANLSADSLKSRTAGLKNAGYRPVWIIGAKRLKRMATQFFRL
SAFHWQFFEVHSFSSLLFYCPDARSFYRLHSITPFYTGYSYAGLTAIPLHKANLKDICHPEGRHSVRLPSWGRAVAGFRN
KSERFLSEDAGLIRRLFYERHQVAFPFLPSEVFIPVSAGFVFASPVFVWQGHLYLRIAELSKKGASIRLSGMVHDLRQKI
RRKEIRMRYGSQDSLIRMAVKQYADFLCLQDFLREIENEVYMPSSQRKLPQTAEELRRQDLLFFGE

Nucleotide


Download         Length: 1161 bp        

>NTDB_id=250067 BAALB65_RS06235 WP_109566855.1 1181840..1183000(+) (coiA) [Bacillus amyloliquefaciens strain ALB65]
ATGTTCAGTGCTGTGACTGCCGACGGACGGCTCATTCAGCTGGCCGGAAGCTATTCAAAGGAAAAAGCGGCGGAGCTGAG
AAAGAAAAGCTGGTTCTGCCCTGTTTGCAAAAGTGAGCTTGATATCAAACTGGGACGGGAGAAACTGCCGCACTTCGCTC
ATAAAAAAAGCAGGCTGTGTCCGGGGGAATCCGAACCCGAAAGCGAATACCATCTGGAAGGAAAAAGGCAGCTTTTTCTC
TGGCTAAAGACACAAGGGTGCAGTGTCAGCCTGGAACCGTATCTGACTTCCGCTGGACAGCGGCCTGACTTGACGGCAGT
AAGCGGAGAAGAGAGGCTGGCTTTTGAATTTCAATGTGCGAACCTTTCGGCGGACTCTTTAAAGAGCCGGACGGCAGGCC
TGAAAAATGCCGGTTACCGGCCGGTCTGGATCATCGGGGCAAAACGGTTAAAACGGATGGCCACGCAATTTTTCCGGCTT
TCTGCTTTTCACTGGCAGTTCTTTGAAGTCCATTCATTTTCCTCCTTACTGTTTTACTGCCCCGACGCCCGCTCCTTTTA
CAGGCTGCATTCCATCACTCCGTTTTACACCGGCTATTCTTATGCCGGCTTAACCGCAATCCCTCTTCACAAAGCAAACC
TGAAAGACATTTGTCATCCGGAAGGGCGGCACAGCGTCAGACTTCCCTCGTGGGGACGTGCCGTAGCCGGCTTCCGCAAC
AAAAGCGAGCGGTTTTTATCTGAAGATGCCGGTCTTATCCGGCGTCTTTTTTACGAAAGACATCAGGTTGCATTTCCATT
TCTCCCATCTGAAGTGTTTATTCCCGTTTCAGCGGGCTTTGTTTTTGCAAGTCCCGTTTTTGTGTGGCAGGGCCATTTAT
ACTTACGGATTGCGGAACTTTCTAAAAAAGGCGCGTCAATCCGATTATCCGGCATGGTTCATGATTTGCGGCAAAAAATC
AGGCGTAAGGAGATTCGGATGCGGTATGGTTCACAAGATAGCCTTATCAGAATGGCGGTAAAACAATATGCTGATTTCTT
ATGCTTGCAGGATTTTTTAAGGGAAATTGAGAATGAAGTATATATGCCCTCATCTCAACGGAAGCTCCCTCAAACGGCAG
AAGAGCTGCGCCGGCAGGATCTGCTCTTTTTTGGGGAATGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Bacillus subtilis subsp. subtilis str. 168

47.159

91.192

0.43


Multiple sequence alignment