Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   BAALB65_RS03325 Genome accession   NZ_CP029069
Coordinates   608660..609295 (+) Length   211 a.a.
NCBI ID   WP_053285505.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain ALB65     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 603660..614295
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAALB65_RS03290 (BAALB65_03290) - 604012..604257 (-) 246 WP_007409324.1 hypothetical protein -
  BAALB65_RS03295 (BAALB65_03295) - 604408..605622 (-) 1215 WP_109566733.1 MFS transporter -
  BAALB65_RS03300 (BAALB65_03300) - 605619..606656 (-) 1038 WP_014417031.1 ROK family protein -
  BAALB65_RS03305 (BAALB65_03305) - 606803..607057 (+) 255 WP_109566734.1 maltose acetyltransferase domain-containing protein -
  BAALB65_RS20255 - 607176..607394 (+) 219 WP_051363648.1 hypothetical protein -
  BAALB65_RS03320 (BAALB65_03320) - 607450..608667 (+) 1218 WP_021495031.1 sensor histidine kinase -
  BAALB65_RS03325 (BAALB65_03325) vraR 608660..609295 (+) 636 WP_053285505.1 response regulator transcription factor Regulator
  BAALB65_RS03330 (BAALB65_03330) - 609394..611547 (+) 2154 WP_022552671.1 MMPL family transporter -
  BAALB65_RS03335 (BAALB65_03335) - 611581..612303 (-) 723 WP_021495029.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  BAALB65_RS03340 (BAALB65_03340) abc-f 612442..614073 (-) 1632 WP_029974151.1 ABC-F type ribosomal protection protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23621.30 Da        Isoelectric Point: 5.1671

>NTDB_id=250042 BAALB65_RS03325 WP_053285505.1 608660..609295(+) (vraR) [Bacillus amyloliquefaciens strain ALB65]
MYKVLIADDHLVVREGLKLLIETNDHYTITGEAENGKTAVRLAEELKPDVILMDLYMPEMSGLEAIKQIKEHSDVPIIIL
TTYNEDHLMIEGIESGANGYLLKDTSSETLFHTMDAAVRGEVLLQPDILRRFREMKMERANANETQLTDKEIIVLQAVAQ
GHKSKAIAFDLGISERTVKARLTSIYNKLGADSRTEAVTIAMQKGILKLNI

Nucleotide


Download         Length: 636 bp        

>NTDB_id=250042 BAALB65_RS03325 WP_053285505.1 608660..609295(+) (vraR) [Bacillus amyloliquefaciens strain ALB65]
ATGTATAAAGTGTTAATAGCAGATGACCATCTTGTCGTCAGAGAAGGTCTGAAGCTTTTGATAGAAACAAATGACCATTA
CACCATAACGGGAGAAGCGGAAAACGGGAAAACCGCCGTCCGCCTCGCAGAGGAACTAAAGCCCGATGTCATTCTCATGG
ATCTGTACATGCCGGAAATGAGCGGGCTGGAAGCCATTAAACAGATAAAAGAGCATTCTGATGTGCCGATCATTATTTTG
ACGACCTATAATGAAGATCATCTGATGATAGAAGGCATCGAATCAGGCGCGAACGGTTATCTGCTGAAGGACACAAGCTC
AGAAACCTTATTTCATACGATGGATGCGGCAGTCAGGGGAGAAGTGCTTCTGCAGCCGGACATCTTGCGGCGTTTCCGGG
AAATGAAAATGGAACGGGCAAATGCCAATGAAACACAGCTGACGGACAAGGAAATCATAGTTCTGCAAGCCGTTGCGCAA
GGACATAAAAGCAAAGCGATCGCCTTCGATTTAGGAATCTCAGAGCGGACGGTAAAAGCGAGATTAACATCAATTTATAA
CAAATTAGGCGCTGATTCGCGGACGGAAGCCGTCACCATTGCCATGCAAAAAGGCATTCTGAAACTGAATATATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(146-201)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

36.364

99.052

0.36