Detailed information NTG0250041

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: BAALB65_RS02640
• Genome accession: NZ_CP029069
• Coordinates: 501133..502266 (+)
• Length: 377 a.a.
• NCBI ID: WP_109566709.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain ALB65
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 496133..507266

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BAALB65_RS02615 (BAALB65_02615)	-	497633..498064 (+)	432	Protein_477	peptidoglycan-binding protein	-
BAALB65_RS02620 (BAALB65_02620)	-	498176..499326 (+)	1151	WP_099721935.1	IS3 family transposase	-
BAALB65_RS02625 (BAALB65_02625)	-	499390..499947 (-)	558	WP_025649978.1	hypothetical protein	-
BAALB65_RS02630 (BAALB65_02630)	-	500011..500460 (-)	450	WP_025649977.1	hypothetical protein	-
BAALB65_RS02640 (BAALB65_02640)	rapC	501133..502266 (+)	1134	WP_109566709.1	Rap family tetratricopeptide repeat protein	Regulator
BAALB65_RS20550	-	502263..502397 (+)	135	WP_275425629.1	hypothetical protein	-
BAALB65_RS20380 (BAALB65_02645)	-	502787..503017 (-)	231	WP_043021422.1	hypothetical protein	-
BAALB65_RS20620 (BAALB65_02650)	-	503199..503378 (-)	180	WP_109566710.1	hypothetical protein	-
BAALB65_RS02655 (BAALB65_02655)	-	503392..503949 (-)	558	WP_072177797.1	hypothetical protein	-
BAALB65_RS02660 (BAALB65_02660)	-	504046..504330 (-)	285	WP_014720743.1	hypothetical protein	-
BAALB65_RS02665 (BAALB65_02665)	-	504846..505112 (-)	267	WP_014416946.1	hypothetical protein	-
BAALB65_RS02670 (BAALB65_02670)	-	505218..506495 (-)	1278	WP_088056325.1	Nramp family divalent metal transporter	-

Sequence

Protein

• Length: 377 a.a.
• Molecular weight: 44779.15 Da
• Isoelectric Point: 5.1092

>NTDB_id=250041 BAALB65_RS02640 WP_109566709.1 501133..502266(+) (rapC) [Bacillus amyloliquefaciens strain ALB65]
MDQVLPSSQVGVKINEWYKMIRQFSVPDAEILKAEVEQEIEEMEEDQDLLVFYSLMCFRHQLMLDSLEPEDRYRDRPTVD
ELLEKIEKPQKRLTGLLKYYSLFFRGMYEFDHKEYVEAIGYYRKAERELNAVLDEMEQAEFHYKIADAYYQIDQHFVSLN
HLKKAKQLFEKNQLYKVKVIGCNMMVGANMYDMYRLTEAESYYREALSIARGLEEEKVKRIIGVIFHNLGLVYLRGENLI
AAEENFKKAIDVKEHIDTVYGVRSLYMMANVLYQCDKAKEARFFYETALNRARTSNEEEYLAKLKIINSLYEEYNETAVK
QSLGYLEEKRLWSDFAELTEQLGDFHFEKRNYAEGRNFLKKTIHAQTQILKVTEAIS

Nucleotide

• Length: 1134 bp

>NTDB_id=250041 BAALB65_RS02640 WP_109566709.1 501133..502266(+) (rapC) [Bacillus amyloliquefaciens strain ALB65]
ATGGATCAAGTTTTGCCGTCGTCCCAAGTTGGTGTCAAGATCAATGAATGGTACAAAATGATTCGCCAGTTCAGTGTGCC
TGATGCTGAGATTTTAAAGGCTGAGGTCGAACAGGAAATAGAGGAGATGGAAGAGGATCAGGATTTGCTAGTTTTTTATT
CATTGATGTGCTTTCGTCACCAATTGATGTTAGATTCCTTGGAGCCGGAAGACAGATATAGAGATCGCCCTACAGTCGAC
GAACTGCTTGAAAAAATAGAAAAGCCGCAAAAAAGACTTACAGGCCTCTTGAAGTATTACTCATTATTTTTTCGTGGAAT
GTATGAATTTGATCATAAAGAGTATGTTGAAGCGATAGGCTATTATCGCAAAGCAGAGAGAGAGTTGAATGCTGTATTAG
ATGAAATGGAGCAAGCTGAATTTCATTACAAAATAGCTGATGCCTATTATCAAATTGATCAGCACTTTGTTTCCCTCAAT
CATTTGAAAAAAGCCAAGCAATTGTTTGAAAAAAATCAATTATACAAAGTGAAAGTGATTGGCTGTAATATGATGGTCGG
TGCTAACATGTACGATATGTACAGGCTGACGGAAGCAGAATCATATTATCGGGAAGCATTAAGTATCGCCCGTGGGTTGG
AAGAGGAAAAAGTGAAAAGGATTATCGGAGTGATCTTTCATAACTTAGGCTTAGTTTATTTAAGAGGGGAAAATTTGATT
GCTGCTGAAGAGAATTTCAAAAAGGCAATAGACGTGAAAGAACATATTGATACAGTGTATGGTGTGAGATCATTATATAT
GATGGCAAATGTCCTGTACCAATGTGATAAAGCCAAGGAAGCACGTTTCTTTTATGAAACGGCTTTAAATCGTGCTCGGA
CTTCTAATGAAGAAGAATATTTGGCGAAATTAAAAATCATTAATTCATTATACGAAGAATATAATGAAACAGCAGTGAAA
CAAAGCTTAGGCTACTTAGAAGAGAAACGCCTTTGGTCTGATTTCGCAGAGCTAACTGAACAATTAGGTGACTTTCATTT
TGAGAAGAGAAACTATGCAGAGGGAAGAAACTTTTTAAAGAAAACCATACATGCCCAAACACAAATACTTAAGGTTACGG
AGGCTATATCATGA

Domains

Predicted by InterProScan.

• MalT-like TPR region (TPR_MalT) (156-296)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	37.534	98.939	0.371