Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   BAALB65_RS02565 Genome accession   NZ_CP029069
Coordinates   482845..483279 (+) Length   144 a.a.
NCBI ID   WP_015416842.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain ALB65     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 477845..488279
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAALB65_RS02535 (BAALB65_02535) - 478515..479375 (+) 861 WP_007410307.1 SDR family oxidoreductase -
  BAALB65_RS02540 (BAALB65_02540) - 479388..479891 (+) 504 WP_007410308.1 D-lyxose/D-mannose family sugar isomerase -
  BAALB65_RS02545 (BAALB65_02545) - 479980..480603 (+) 624 WP_109566703.1 GNAT family protein -
  BAALB65_RS02550 (BAALB65_02550) - 480610..481032 (+) 423 WP_003156270.1 pyridoxamine 5'-phosphate oxidase family protein -
  BAALB65_RS02555 (BAALB65_02555) - 481532..482341 (+) 810 WP_015416841.1 lipid II flippase Amj family protein -
  BAALB65_RS02560 (BAALB65_02560) - 482379..482669 (-) 291 WP_007410179.1 DUF3817 domain-containing protein -
  BAALB65_RS02565 (BAALB65_02565) lrpC 482845..483279 (+) 435 WP_015416842.1 Lrp/AsnC family transcriptional regulator Machinery gene
  BAALB65_RS02570 (BAALB65_02570) - 483343..485529 (+) 2187 WP_003156261.1 DNA topoisomerase III -
  BAALB65_RS02575 (BAALB65_02575) - 485762..486847 (+) 1086 WP_109566704.1 lipoprotein YdaJ -
  BAALB65_RS02580 (BAALB65_02580) - 486828..487676 (+) 849 WP_003156258.1 diguanylate cyclase -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16506.16 Da        Isoelectric Point: 8.6776

>NTDB_id=250040 BAALB65_RS02565 WP_015416842.1 482845..483279(+) (lrpC) [Bacillus amyloliquefaciens strain ALB65]
MKLDNVDLSIIKELQRDSRLSMRELGRKIKLSAPSVTERVRQLESFGVIKRYTLDIDQKKIGLPISCIVEATVKNGKYDQ
FKTYIQSIPNIEFCFRVAGAACYMLKMNADSLETIEHFINRTSPYAQTVTHVIFSEIDTKNVLD

Nucleotide


Download         Length: 435 bp        

>NTDB_id=250040 BAALB65_RS02565 WP_015416842.1 482845..483279(+) (lrpC) [Bacillus amyloliquefaciens strain ALB65]
ATGAAACTAGATAATGTGGATCTGAGCATCATTAAAGAGCTGCAGCGGGACAGCCGCCTGTCCATGCGGGAACTGGGCAG
AAAAATCAAATTGTCAGCCCCGTCCGTCACAGAGCGTGTCAGACAGCTTGAATCCTTCGGCGTCATTAAGCGCTATACAT
TGGACATTGATCAAAAAAAGATTGGGCTTCCCATCTCCTGCATTGTCGAAGCGACGGTGAAAAACGGGAAATACGATCAA
TTCAAAACCTACATTCAATCCATTCCCAACATTGAATTTTGTTTTCGGGTCGCCGGGGCGGCGTGTTATATGCTGAAGAT
GAACGCGGACAGCCTGGAAACGATCGAACACTTCATCAACCGCACCTCTCCGTATGCCCAAACCGTGACCCACGTCATTT
TCTCAGAAATTGACACAAAAAACGTCCTCGATTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(69-135)

AsnC-type helix-turn-helix domain (HTH_AsnC-type)

(3-44)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

80.142

97.917

0.785