Detailed information NTG0250029

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: BAALB65_RS01880
• Genome accession: NZ_CP029069
• Coordinates: 321029..322150 (+)
• Length: 373 a.a.
• NCBI ID: WP_014416837.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain ALB65
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 316029..327150

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BAALB65_RS01860 (BAALB65_01860)	-	316336..317331 (-)	996	WP_109566668.1	DUF5105 domain-containing protein	-
BAALB65_RS01865 (BAALB65_01865)	-	317454..318860 (+)	1407	WP_029973935.1	YcdB/YcdC domain-containing protein	-
BAALB65_RS01870 (BAALB65_01870)	-	319061..320419 (+)	1359	WP_109566669.1	YcdB/YcdC domain-containing protein	-
BAALB65_RS01875 (BAALB65_01875)	-	320416..320919 (-)	504	WP_061861816.1	M15 family metallopeptidase	-
BAALB65_RS01880 (BAALB65_01880)	rapF	321029..322150 (+)	1122	WP_014416837.1	tetratricopeptide repeat protein	Regulator
BAALB65_RS01885 (BAALB65_01885)	-	322266..323045 (+)	780	WP_109566670.1	glucose 1-dehydrogenase	-
BAALB65_RS01890 (BAALB65_01890)	-	323127..324806 (+)	1680	Protein_331	alpha-glucosidase	-
BAALB65_RS01895 (BAALB65_01895)	-	324992..325951 (+)	960	WP_029973931.1	metal ABC transporter substrate-binding protein	-
BAALB65_RS01900 (BAALB65_01900)	-	326006..326701 (+)	696	WP_003156655.1	metal ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 373 a.a.
• Molecular weight: 44299.50 Da
• Isoelectric Point: 5.0806

>NTDB_id=250029 BAALB65_RS01880 WP_014416837.1 321029..322150(+) (rapF) [Bacillus amyloliquefaciens strain ALB65]
MKSKIPSEEVAVKMNEWYKLIRAFEADKAEALKREIQFELEDMEENQDLLLYFSLMEFRHRIMLDKLKPMKDGDCQPPFS
EMLTEIEMNQQKLTGLLEYYFYYFRGMYEFKQKNFISAISHYKRAEEKLEYVEDDIEKAEFLYKISEVYYHIKQTFFSMN
YAGQALDIYKKYELYGMRRVQCKFIIAGNLMDAQQHKKALEYLECALEHAERLDDQYMIAAAYYNIGHCMYSLGDFCKAA
EDFERAAAGFEAHSFRQVIQAVFSLTHIYFKTEKYSEAAASCARGMRSAAEWEDEIYLTKFRLIKELYQGEGGQDSLKEY
FDILESKELLADTEELLQDAAHFFHQRENYKAASYFFSRLVGVQKRLQMNNYA

Nucleotide

• Length: 1122 bp

>NTDB_id=250029 BAALB65_RS01880 WP_014416837.1 321029..322150(+) (rapF) [Bacillus amyloliquefaciens strain ALB65]
ATGAAATCCAAGATTCCATCTGAAGAAGTGGCCGTAAAGATGAATGAATGGTATAAGCTGATCCGCGCGTTTGAAGCCGA
TAAAGCTGAAGCGCTGAAACGGGAGATTCAATTTGAACTCGAAGATATGGAAGAGAACCAGGATTTATTGTTGTATTTTT
CATTGATGGAATTTCGGCACCGCATCATGCTGGATAAATTAAAACCCATGAAAGACGGCGACTGCCAGCCTCCGTTCTCT
GAAATGCTCACTGAGATTGAGATGAACCAGCAAAAGCTGACCGGCTTACTGGAATATTATTTTTACTATTTCAGGGGAAT
GTATGAATTTAAGCAGAAAAACTTCATCTCAGCGATTTCTCATTATAAGCGGGCTGAGGAAAAGCTTGAATATGTGGAAG
ATGACATAGAGAAAGCCGAGTTTTTGTATAAAATTTCTGAGGTGTACTATCATATCAAGCAGACTTTCTTTTCGATGAAT
TACGCAGGACAGGCGCTTGATATTTACAAGAAATATGAATTATACGGAATGAGAAGGGTGCAGTGCAAATTTATCATTGC
CGGAAATCTGATGGACGCCCAGCAGCATAAAAAAGCGCTGGAATACCTCGAATGCGCCTTGGAGCACGCGGAGCGGCTTG
ATGATCAATATATGATTGCTGCGGCCTATTATAATATCGGGCACTGTATGTACAGTCTGGGTGACTTTTGCAAGGCGGCG
GAGGATTTTGAACGGGCGGCCGCCGGATTTGAAGCACACAGCTTCCGGCAGGTCATCCAGGCTGTTTTTTCACTCACGCA
TATCTACTTTAAAACGGAAAAATACAGTGAAGCCGCCGCCAGCTGCGCGCGGGGCATGAGAAGCGCGGCGGAATGGGAAG
ATGAGATCTATCTGACGAAATTCCGTCTGATTAAAGAGCTTTATCAGGGGGAAGGCGGACAGGATTCGCTCAAAGAGTAT
TTTGACATTCTGGAATCAAAAGAGCTGTTGGCTGACACAGAGGAACTGCTTCAGGACGCGGCTCATTTCTTTCATCAACG
GGAGAACTACAAAGCGGCATCTTATTTTTTCAGCAGGCTTGTCGGCGTGCAAAAAAGGCTGCAAATGAACAACTACGCAT
AA

Domains

Predicted by InterProScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

• Tetratricopeptide repeat (TPR_12) (187-251)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	42.857	99.464	0.426
rapC	Bacillus subtilis subsp. subtilis str. 168	40.323	99.732	0.402