Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   FORC81_RS02305 Genome accession   NZ_CP029057
Coordinates   510146..511573 (-) Length   475 a.a.
NCBI ID   WP_072664135.1    Uniprot ID   -
Organism   Escherichia coli strain FORC_081     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 505146..516573
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC81_RS02280 hisL 506171..506221 (-) 51 WP_001364200.1 his operon leader peptide -
  FORC81_RS02285 (FORC81_0466) yeeZ 506648..507472 (+) 825 WP_000754726.1 SDR family oxidoreductase -
  FORC81_RS02290 (FORC81_0467) yeeY 507518..508447 (+) 930 WP_000803364.1 LysR substrate-binding domain-containing protein -
  FORC81_RS02295 yoeI 508662..508724 (+) 63 WP_010723108.1 membrane protein YoeI -
  FORC81_RS02300 (FORC81_0468) plaP 508714..510072 (+) 1359 WP_000019201.1 putrescine/proton symporter PlaP -
  FORC81_RS02305 (FORC81_0469) sbcB 510146..511573 (-) 1428 WP_072664135.1 exodeoxyribonuclease I Machinery gene
  FORC81_RS02310 (FORC81_0470) dacD 511782..512948 (+) 1167 WP_072664134.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  FORC81_RS02315 (FORC81_0471) sbmC 513067..513540 (+) 474 WP_097462550.1 DNA gyrase inhibitor SbmC -
  FORC81_RS02320 (FORC81_0472) yeeA 513739..514797 (+) 1059 WP_001200890.1 FUSC family protein -
  FORC81_RS02325 (FORC81_0474) tmaR 514969..515298 (+) 330 WP_000450409.1 DUF496 family protein -
  FORC81_RS02330 (FORC81_0475) - 515399..515581 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  FORC81_RS26155 - 515588..515707 (-) 120 Protein_459 DUF5983 family protein -
  FORC81_RS02335 (FORC81_0476) cbtA 515704..516077 (-) 374 Protein_460 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  FORC81_RS02340 (FORC81_0477) cbeA 516166..516534 (-) 369 WP_001285585.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54486.83 Da        Isoelectric Point: 5.4700

>NTDB_id=249941 FORC81_RS02305 WP_072664135.1 510146..511573(-) (sbcB) [Escherichia coli strain FORC_081]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRLEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELLMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=249941 FORC81_RS02305 WP_072664135.1 510146..511573(-) (sbcB) [Escherichia coli strain FORC_081]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTATTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAACGTCATCGGCGAACCCGAAGTTTTTTACTGCAAACCCG
CGGATGACTATTTACCGCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCACGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTAGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTCTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAACTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCTGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTTTTCACGCCAGAGTTTTTGCAGGGCTATGCTGATGAATTGCTGATGCTGGCACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCACTTTGGCAGTACGCGGAAGAGATCGTCTGA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583