Detailed information NTG0249936

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: COR50_RS06020
• Genome accession: NZ_CP023777
• Coordinates: 1421555..1422931 (+)
• Length: 458 a.a.
• NCBI ID: WP_098193153.1
• Uniprot ID: A0A291QS58
• Organism: Chitinophaga caeni strain 13
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1416555..1427931

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
COR50_RS06010 (COR50_06010)	-	1416811..1419849 (-)	3039	WP_098193151.1	TonB-dependent receptor	-
COR50_RS06015 (COR50_06015)	-	1420105..1420794 (-)	690	WP_098193152.1	zinc metallopeptidase	-
COR50_RS06020 (COR50_06020)	radA	1421555..1422931 (+)	1377	WP_098193153.1	DNA repair protein RadA	Machinery gene
COR50_RS06025 (COR50_06025)	-	1423004..1423666 (+)	663	WP_157760647.1	ComF family protein	-
COR50_RS06030 (COR50_06030)	-	1423744..1423947 (-)	204	WP_098193155.1	hypothetical protein	-
COR50_RS06035 (COR50_06035)	-	1424479..1425501 (+)	1023	WP_098193156.1	homocysteine S-methyltransferase family protein	-

Sequence

Protein

• Length: 458 a.a.
• Molecular weight: 50851.49 Da
• Isoelectric Point: 6.4242

>NTDB_id=249936 COR50_RS06020 WP_098193153.1 1421555..1422931(+) (radA) [Chitinophaga caeni strain 13]
MSKIKTAFFCQACGYESAKWTGKCPSCNSWNTFVEEKIQKDISPRHYDWRDSKEAHVAKTKIVQLSAVEGAEERRILTPD
AELNRVLGGGIVEGSLVLVGGEPGIGKSTLFLQNALALKGIKILYVSGEESEQQIKMRADRLNILNDDFYLLTETSTQEI
FQEIKKLQPNLVIVDSIQTLHSPMIDSAPGSVSQVRETTAELQRFAKESQVPVFIIGHITKDGAIAGPKVLEHMVDTVLQ
FEGDQHYAYRILRTIKNRFGSTAELGIYEMTGNGLRQVSNPSEILISQREDQLSGIAIAATIEGLRPMLIEVQALVTQSV
YGTPQRTATGFDLRRLQLLLAVLEKRGGFHFGVKDVFLNIAGGIRVEDPSIDLAVLCSLLSSYEDIPLSNHVCFAGEVGL
SGEIRAVNRIEQRIAEAEKLGFEKIFISKYHKKGLNLSKFKIEIVPVGRVEEVYQLLF

Nucleotide

• Length: 1377 bp

>NTDB_id=249936 COR50_RS06020 WP_098193153.1 1421555..1422931(+) (radA) [Chitinophaga caeni strain 13]
ATGAGTAAAATTAAAACGGCTTTCTTCTGCCAGGCTTGTGGTTATGAATCTGCAAAATGGACCGGTAAGTGTCCTTCTTG
TAATAGTTGGAATACATTCGTCGAAGAAAAAATTCAAAAAGATATTTCCCCGAGGCATTATGATTGGAGAGACTCCAAAG
AGGCGCATGTTGCTAAAACGAAGATCGTGCAATTGTCGGCGGTTGAAGGTGCTGAAGAAAGGCGGATACTCACTCCTGAT
GCGGAATTGAATAGGGTGCTTGGTGGAGGTATCGTTGAAGGTTCGCTCGTCCTCGTTGGTGGTGAACCGGGTATTGGTAA
ATCAACTTTGTTCTTACAGAATGCGCTGGCTTTAAAAGGAATTAAAATACTTTATGTAAGCGGTGAAGAGAGTGAACAAC
AAATAAAAATGCGGGCGGATCGCTTGAATATTTTGAACGATGATTTCTACCTGCTAACGGAAACCTCCACCCAAGAAATT
TTCCAAGAGATTAAAAAGTTGCAACCGAACTTGGTTATCGTCGACTCTATTCAAACACTTCATTCCCCCATGATCGATTC
AGCTCCCGGCAGCGTTTCCCAGGTGAGGGAAACAACTGCTGAATTGCAACGTTTCGCGAAGGAATCACAAGTTCCCGTTT
TTATAATCGGTCATATCACCAAGGATGGAGCCATCGCCGGACCAAAAGTTTTGGAGCATATGGTAGATACCGTTTTGCAG
TTCGAGGGAGATCAACATTATGCATACCGGATATTGCGAACTATTAAAAATCGTTTCGGCTCCACGGCTGAACTGGGTAT
CTATGAAATGACCGGCAATGGCTTGCGCCAAGTGAGCAATCCTTCGGAGATATTAATATCCCAGAGGGAAGACCAGCTGA
GCGGGATCGCGATAGCGGCCACTATTGAAGGGTTAAGACCGATGTTGATCGAGGTGCAGGCCTTGGTCACACAATCCGTT
TACGGTACCCCGCAACGAACGGCGACGGGTTTCGATTTGCGTAGGTTGCAATTGTTGCTGGCCGTGTTGGAAAAACGGGG
TGGCTTTCATTTCGGTGTGAAGGACGTATTTTTAAATATCGCCGGGGGAATAAGGGTAGAAGATCCCTCGATCGATTTAG
CCGTTCTTTGTTCATTGCTTTCTTCGTATGAAGATATCCCGCTTTCGAACCATGTTTGTTTTGCAGGGGAGGTAGGATTA
AGCGGGGAAATCCGCGCGGTAAACCGTATTGAACAAAGGATCGCGGAAGCGGAGAAACTTGGCTTTGAAAAAATCTTTAT
TTCCAAATACCATAAAAAGGGATTAAACCTCTCCAAGTTTAAGATAGAAATTGTTCCTGTCGGGAGGGTAGAAGAGGTAT
ACCAATTGTTATTTTAA

Domains

Predicted by InterproScan.

• AAA domain (AAA_25) (72-223)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (9-35)

• Subunit ChlI of Mg-chelatase (ChlI) (345-429)

3D structure

• AlphaFold DB: A0A291QS58

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Streptococcus pneumoniae R6	50.54	100	0.511
radA	Streptococcus pneumoniae Rx1	50.54	100	0.511
radA	Streptococcus pneumoniae D39	50.54	100	0.511
radA	Streptococcus pneumoniae TIGR4	50.54	100	0.511
radA	Bacillus subtilis subsp. subtilis str. 168	50.98	100	0.511
radA	Streptococcus mitis NCTC 12261	50.324	100	0.509
radA	Streptococcus mitis SK321	50.108	100	0.507