Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   FORC84_RS06170 Genome accession   NZ_CP029054
Coordinates   1173113..1173607 (+) Length   164 a.a.
NCBI ID   WP_002852694.1    Uniprot ID   -
Organism   Campylobacter jejuni strain FORC_084     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1168113..1178607
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC84_RS06155 (FORC84_1217) - 1169499..1170677 (-) 1179 WP_002852672.1 metal-dependent hydrolase -
  FORC84_RS06160 (FORC84_1218) gpsA 1170687..1171583 (-) 897 WP_072233169.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  FORC84_RS06165 (FORC84_1219) gatB 1171580..1172998 (-) 1419 WP_002852902.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  FORC84_RS06170 (FORC84_1220) luxS 1173113..1173607 (+) 495 WP_002852694.1 S-ribosylhomocysteine lyase Regulator
  FORC84_RS06175 (FORC84_1221) - 1173919..1174911 (+) 993 WP_002852878.1 isopenicillin N synthase family oxygenase -
  FORC84_RS06180 (FORC84_1222) - 1174922..1175692 (+) 771 WP_002852735.1 MetQ/NlpA family ABC transporter substrate-binding protein -
  FORC84_RS06185 (FORC84_1223) metE 1175704..1177968 (+) 2265 WP_002852733.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18194.21 Da        Isoelectric Point: 7.3250

>NTDB_id=249914 FORC84_RS06170 WP_002852694.1 1173113..1173607(+) (luxS) [Campylobacter jejuni strain FORC_084]
MPLLDSFKVDHTKMPAPAVRLAKVIKTPKGDDISVFDLRFCIPNKDIMSEKGTHTLEHLFAGFMRDHLNSNSVEIIDISP
MGCRTGFYMSLIGTPDEKSVAKAWKAAMKDVLSVSDQSKIPELNIYQCGTCAMHSLDEAKQIAQKVLNLGISIMNNKELK
LENA

Nucleotide


Download         Length: 495 bp        

>NTDB_id=249914 FORC84_RS06170 WP_002852694.1 1173113..1173607(+) (luxS) [Campylobacter jejuni strain FORC_084]
ATGCCATTATTAGACAGCTTTAAAGTTGACCATACTAAAATGCCAGCTCCTGCTGTGCGTTTAGCTAAAGTTATAAAAAC
ACCTAAGGGTGATGATATTAGCGTGTTTGATTTGCGTTTTTGCATACCAAATAAAGACATTATGAGCGAAAAAGGTACTC
ATACCTTAGAACATTTATTTGCAGGATTTATGAGAGATCATTTAAATTCAAATTCAGTTGAAATTATTGATATTTCACCT
ATGGGTTGTCGCACGGGTTTTTATATGAGTTTAATTGGAACACCAGATGAAAAAAGTGTTGCTAAAGCTTGGAAAGCAGC
TATGAAAGATGTTTTAAGCGTAAGCGATCAAAGCAAAATTCCTGAACTTAATATCTATCAATGCGGAACTTGCGCAATGC
ATTCTTTAGATGAAGCCAAACAAATTGCCCAAAAGGTTTTAAATCTAGGTATTAGCATAATGAATAACAAAGAATTAAAA
CTCGAGAATGCTTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

72.05

98.171

0.707