Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   PFL01_RS15095 Genome accession   NC_007492
Coordinates   3446366..3446860 (+) Length   164 a.a.
NCBI ID   WP_011334402.1    Uniprot ID   -
Organism   Pseudomonas fluorescens Pf0-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3441366..3451860
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PFL01_RS15075 (Pfl01_3000) - 3441791..3442231 (+) 441 WP_011334397.1 single-stranded DNA-binding protein -
  PFL01_RS15080 (Pfl01_3001) - 3442472..3444439 (+) 1968 WP_011334398.1 DNA topoisomerase III -
  PFL01_RS15085 (Pfl01_3003) - 3445343..3445936 (+) 594 WP_011334400.1 STY4534 family ICE replication protein -
  PFL01_RS15090 (Pfl01_3004) - 3446008..3446265 (+) 258 WP_011334401.1 hypothetical protein -
  PFL01_RS15095 (Pfl01_3005) radC 3446366..3446860 (+) 495 WP_011334402.1 RadC family protein Machinery gene
  PFL01_RS15100 (Pfl01_3006) - 3446913..3447659 (+) 747 WP_011334403.1 hypothetical protein -
  PFL01_RS15105 (Pfl01_3007) - 3447766..3448308 (+) 543 WP_011334404.1 PilL N-terminal domain-containing protein -
  PFL01_RS15110 (Pfl01_3008) - 3448305..3448976 (+) 672 WP_011334405.1 hypothetical protein -
  PFL01_RS15115 (Pfl01_3009) - 3448986..3449705 (+) 720 WP_041475293.1 TIGR03759 family integrating conjugative element protein -
  PFL01_RS15120 (Pfl01_3010) - 3449687..3450235 (+) 549 WP_041475294.1 hypothetical protein -
  PFL01_RS15125 (Pfl01_3011) - 3450232..3450747 (+) 516 WP_011334408.1 integrating conjugative element protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18332.95 Da        Isoelectric Point: 6.3301

>NTDB_id=24987 PFL01_RS15095 WP_011334402.1 3446366..3446860(+) (radC) [Pseudomonas fluorescens Pf0-1]
MSTQLTLIETSDFEADRIVQENQLIDEALHILDRRLFARGPILTSPDTVASYLKLHLAQQEHEVFGVIFLDARHRVLAFE
VLFHGSIDGASVYPRQVVKRSLAHNAAATIFVHNHPSGCTEPSQADRVLTARLKEALALIEVRVLDHFIVGEGRPLSLAE
HGWL

Nucleotide


Download         Length: 495 bp        

>NTDB_id=24987 PFL01_RS15095 WP_011334402.1 3446366..3446860(+) (radC) [Pseudomonas fluorescens Pf0-1]
ATGAGCACCCAACTCACACTGATTGAGACCTCGGATTTCGAGGCTGATCGCATTGTCCAAGAAAACCAGCTGATCGACGA
AGCGCTGCATATTCTGGATCGTCGGCTGTTCGCCCGCGGCCCTATCCTGACGTCGCCTGACACTGTGGCCTCATACCTAA
AACTGCACCTTGCGCAACAAGAGCATGAAGTCTTCGGTGTGATCTTTCTCGATGCCAGGCACCGGGTGCTGGCATTCGAA
GTCCTCTTTCACGGCAGCATTGATGGCGCCAGCGTTTACCCCCGCCAAGTCGTTAAGCGTTCCCTCGCGCATAACGCTGC
GGCCACCATTTTTGTTCACAACCACCCCTCAGGGTGTACGGAACCCAGCCAGGCGGATCGCGTCTTGACTGCACGACTGA
AGGAGGCCTTGGCCTTGATCGAAGTGCGTGTACTGGATCACTTTATCGTGGGTGAAGGTCGTCCTCTCTCCCTTGCCGAA
CATGGCTGGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(44-162)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

48.387

75.61

0.366

Multiple sequence alignment