Detailed information NTG0249866

Bioinformatically predicted

Overview

• Name: waaF
• Type: Regulator
• Locus tag: DCO55_RS06015
• Genome accession: NZ_CP029053
• Coordinates: 1148950..1149894 (+)
• Length: 314 a.a.
• NCBI ID: WP_253683867.1
• Uniprot ID: -
• Organism: Campylobacter jejuni strain c021
• Function: repress natural transformation (predicted from homology) Competence regulation

Genomic Context

Location: 1143950..1154894

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DCO55_RS05995 (DCO55_06115)	-	1144589..1145527 (-)	939	WP_002844801.1	NAD-dependent epimerase/dehydratase family protein	-
DCO55_RS06000 (DCO55_06120)	gmd	1145520..1146659 (-)	1140	WP_002844800.1	GDP-mannose 4,6-dehydratase	-
DCO55_RS06005 (DCO55_06125)	-	1146660..1148027 (-)	1368	WP_002844799.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
DCO55_RS06010 (DCO55_06130)	-	1148070..1148891 (-)	822	WP_253683865.1	glycosyltransferase family 2 protein	-
DCO55_RS06015 (DCO55_06135)	waaF	1148950..1149894 (+)	945	WP_253683867.1	lipopolysaccharide heptosyltransferase II	Regulator
DCO55_RS06020 (DCO55_06140)	-	1149887..1150651 (-)	765	WP_253683870.1	glycosyltransferase family 25 protein	-
DCO55_RS06025 (DCO55_06145)	gmhA	1150651..1151211 (-)	561	WP_253683872.1	D-sedoheptulose 7-phosphate isomerase	-
DCO55_RS06030 (DCO55_06150)	rfaE1	1151208..1152593 (-)	1386	WP_253683874.1	D-glycero-beta-D-manno-heptose-7-phosphate kinase	-
DCO55_RS06035 (DCO55_06155)	rfaD	1152586..1153539 (-)	954	WP_167844445.1	ADP-glyceromanno-heptose 6-epimerase	-
DCO55_RS06040 (DCO55_06160)	gmhB	1153540..1154100 (-)	561	WP_002878815.1	D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase	-
DCO55_RS06045 (DCO55_06165)	-	1154182..1154484 (+)	303	WP_002852762.1	cytochrome c	-
DCO55_RS06050 (DCO55_06170)	ccoS	1154507..1154713 (-)	207	WP_002852798.1	cbb3-type cytochrome oxidase assembly protein CcoS	-

Sequence

Protein

• Length: 314 a.a.
• Molecular weight: 36051.49 Da
• Isoelectric Point: 10.3316

>NTDB_id=249866 DCO55_RS06015 WP_253683867.1 1148950..1149894(+) (waaF) [Campylobacter jejuni strain c021]
MKVFIHLPTWLGDAVMASPALYAIKEHFKNAQFILYGSFVSTALFKEFPNSKIIIENKLSRYKQALSLRKELGKIDFSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQSPLVLKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDIFITNDS
GPMHIAAAYKTKTIAIFGPTKFTQTSPWQNQNAKLVHLNLACMPCMQKTCPLKHHQCMKDLKPEKILEAIRNFT

Nucleotide

• Length: 945 bp

>NTDB_id=249866 DCO55_RS06015 WP_253683867.1 1148950..1149894(+) (waaF) [Campylobacter jejuni strain c021]
ATGAAAGTTTTTATCCATCTTCCCACTTGGCTAGGCGATGCAGTGATGGCTTCACCTGCTTTATACGCCATAAAAGAACA
TTTTAAAAATGCTCAGTTTATCCTTTATGGTTCTTTTGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACTATCCCGTTATAAACAAGCCCTATCTTTACGCAAAGAACTTGGTAAGATCGATTTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTGCATATTCTTAAAACGAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTAGTATAAAAGCTCATTTTAAAGACTTAA
AGCTTCCCTTTAAGCTAAAATTTCAAAGCCCTCTTGTCTTAAAAAATGGCAAAAAAATTCTAGGACTCAACCCTGGTGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAGATTTT
AATCTTTGGTGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGTGATATCTTCATCACAAATGATAGT
GGCCCTATGCACATAGCTGCCGCTTATAAAACAAAAACCATAGCTATCTTTGGGCCTACTAAATTTACCCAAACCTCACC
TTGGCAAAATCAAAATGCAAAATTAGTACATCTAAATTTAGCTTGTATGCCTTGCATGCAAAAAACCTGCCCTTTAAAAC
ATCATCAGTGTATGAAAGATTTAAAACCGGAAAAAATTTTAGAAGCAATCCGAAATTTTACTTAA

Domains

Predicted by InterProScan.

• Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9) (96-294)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
waaF	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	92.013	99.682	0.917