Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   DCO55_RS03430 Genome accession   NZ_CP029053
Coordinates   652601..652984 (+) Length   127 a.a.
NCBI ID   WP_253684231.1    Uniprot ID   -
Organism   Campylobacter jejuni strain c021     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 647601..657984
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DCO55_RS03410 (DCO55_03495) - 647680..649614 (-) 1935 WP_212147147.1 ribonuclease R family protein -
  DCO55_RS03415 (DCO55_03500) ilvC 649733..650755 (+) 1023 WP_052817302.1 ketol-acid reductoisomerase -
  DCO55_RS03420 (DCO55_03505) - 650759..651841 (+) 1083 WP_253684230.1 divergent polysaccharide deacetylase family protein -
  DCO55_RS03425 (DCO55_03510) dprA 651831..652604 (+) 774 WP_002868431.1 DNA-processing protein DprA Machinery gene
  DCO55_RS03430 (DCO55_03515) dprB 652601..652984 (+) 384 WP_253684231.1 Holliday junction resolvase RuvX Machinery gene
  DCO55_RS03435 (DCO55_03520) - 653013..653852 (+) 840 WP_002866496.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  DCO55_RS03440 (DCO55_03525) msrA 654042..654524 (-) 483 Protein_674 peptide-methionine (S)-S-oxide reductase MsrA -
  DCO55_RS03445 (DCO55_03530) ppa 654566..655084 (-) 519 WP_002871349.1 inorganic diphosphatase -
  DCO55_RS03450 (DCO55_03535) adk 655094..655672 (-) 579 WP_052794065.1 adenylate kinase -
  DCO55_RS03455 (DCO55_03540) aspS 655669..657420 (-) 1752 WP_253684232.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14116.65 Da        Isoelectric Point: 9.5433

>NTDB_id=249854 DCO55_RS03430 WP_253684231.1 652601..652984(+) (dprB) [Campylobacter jejuni strain c021]
MRALALDVGLKRIGVALCIDKKIALPLDAVLRKNRNQVANEIKNLLKIHEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALGYGVANTRKKDGKLDSLSAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=249854 DCO55_RS03430 WP_253684231.1 652601..652984(+) (dprB) [Campylobacter jejuni strain c021]
ATGAGAGCTTTGGCTTTAGATGTAGGTTTAAAACGCATAGGTGTAGCGCTTTGCATAGATAAAAAGATCGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGTCGCTAATGAAATCAAAAATTTACTTAAAATACATGAGATTTCTTTAC
TCATTGTAGGCATTCCTAAGGGTGGATCAAGTGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTTTCTTTGCTTGAA
TTTGATAAAGAAATTTGCTTTGTAGATGAAAGCGGAACAAGCAAAGAAGCTTTAGGATACGGCGTAGCCAATACACGCAA
AAAAGATGGTAAATTAGACTCCTTATCCGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

44.094

100

0.441

Multiple sequence alignment