Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   DCO55_RS00905 Genome accession   NZ_CP029053
Coordinates   179310..180815 (-) Length   501 a.a.
NCBI ID   WP_058001065.1    Uniprot ID   -
Organism   Campylobacter jejuni strain c021     
Function   interact with DprA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 174310..185815
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DCO55_RS00875 (DCO55_00890) - 174512..175696 (-) 1185 WP_057031511.1 metallophosphoesterase -
  DCO55_RS00880 (DCO55_00895) - 175706..175915 (-) 210 WP_029588476.1 alkylphosphonate utilization protein -
  DCO55_RS00885 (DCO55_00900) - 175908..176627 (-) 720 WP_126207958.1 TerC family protein -
  DCO55_RS00890 (DCO55_00905) purN 176699..177265 (-) 567 WP_002937159.1 phosphoribosylglycinamide formyltransferase -
  DCO55_RS00895 (DCO55_00910) - 177256..178626 (-) 1371 WP_253684122.1 NAD(P)H-hydrate dehydratase -
  DCO55_RS00900 (DCO55_00915) - 178610..179308 (-) 699 WP_002826913.1 NYN domain-containing protein -
  DCO55_RS00905 (DCO55_00920) comM 179310..180815 (-) 1506 WP_058001065.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  DCO55_RS00910 (DCO55_00925) def 180812..181339 (-) 528 WP_002851936.1 peptide deformylase -
  DCO55_RS00915 (DCO55_00930) clpP 181375..181959 (-) 585 WP_002806309.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  DCO55_RS00920 (DCO55_00935) tig 181959..183293 (-) 1335 WP_253684125.1 trigger factor -
  DCO55_RS00925 (DCO55_00940) folE 183437..184009 (+) 573 WP_052782236.1 GTP cyclohydrolase I FolE -
  DCO55_RS00930 (DCO55_00945) fliI 184009..185394 (+) 1386 WP_052782237.1 flagellar protein export ATPase FliI -

Sequence

Protein


Download         Length: 501 a.a.        Molecular weight: 56473.53 Da        Isoelectric Point: 8.7353

>NTDB_id=249845 DCO55_RS00905 WP_058001065.1 179310..180815(-) (comM) [Campylobacter jejuni strain c021]
MKKLKCISFHEGLDIIEVESTFTRGLPNLSIVGLASTAIKESVERIKATLLSCDFAFPAKKITINLSPSGIPKKGSHFDL
AIALLILLQNEELDDFFVVGELGLDGSIKSTNELFSLLLFLSTKIKKAKIVVPKSIAQKASMIPNLEVYGLENLNEAIEF
FKEKNYENFRFSHNHPLFANPLQIENEIFLQNMDFKLDFKDIKGQEKAKRACMIAALGMHNILFEGSPGSGKSMCAKRLV
YIMPPQSLSEILMQNAYMSLDSKDCEFTKIRAFRHPHHTSTRASIFGGGTKNARIGEVALANGGVLFFDEFPHFNKQIIE
SLREPLEDYKIHISRVNSKITYETKFSFIAAQNPCPCGNLFSKNLSCVCSENEIKKYKNHISAPIMDRIDLYVAMDEISK
DDKVSISSKEMSEKILQAFIFGKKRGQKEFNGKLKDEDLSRFCVLEKDAKDTLDLAISRYNLSLRSLNKILKVSRSIADL
EQSLNINKTHILEALSFRARN

Nucleotide


Download         Length: 1506 bp        

>NTDB_id=249845 DCO55_RS00905 WP_058001065.1 179310..180815(-) (comM) [Campylobacter jejuni strain c021]
ATGAAAAAACTAAAGTGCATAAGCTTTCATGAAGGCTTAGACATTATAGAGGTAGAATCCACTTTTACAAGAGGTTTGCC
AAATTTAAGCATAGTAGGGCTTGCAAGTACAGCGATTAAGGAAAGTGTCGAACGCATCAAAGCCACACTTTTAAGTTGTG
ATTTTGCTTTTCCTGCTAAAAAAATCACTATCAATCTTAGTCCTTCAGGCATCCCAAAAAAGGGATCGCATTTTGATTTG
GCTATCGCTTTATTAATCCTTTTGCAAAATGAAGAATTAGATGACTTTTTTGTAGTAGGAGAATTAGGACTTGATGGAAG
TATTAAAAGCACAAATGAGCTTTTTTCTTTGCTTTTGTTTCTCTCTACTAAAATTAAAAAAGCTAAGATTGTTGTTCCAA
AAAGTATAGCACAAAAAGCTTCCATGATACCAAATTTAGAGGTTTATGGACTTGAAAATTTAAATGAAGCAATAGAGTTT
TTTAAAGAAAAAAATTATGAAAATTTTCGCTTTTCTCACAATCATCCTTTATTTGCAAACCCTTTACAAATAGAAAATGA
AATTTTTTTACAAAATATGGATTTTAAACTTGATTTTAAAGATATCAAAGGGCAGGAAAAAGCCAAAAGAGCTTGTATGA
TAGCTGCTTTAGGTATGCATAATATCTTATTTGAAGGAAGTCCAGGAAGTGGTAAAAGCATGTGTGCTAAACGCCTTGTT
TATATCATGCCCCCTCAAAGTTTAAGTGAAATTTTAATGCAAAATGCTTATATGTCTTTAGATTCAAAAGATTGTGAATT
TACTAAAATTCGTGCTTTTCGCCATCCTCATCATACTTCTACAAGAGCAAGTATTTTTGGCGGAGGAACAAAAAATGCCA
GAATTGGAGAAGTAGCACTTGCAAATGGTGGAGTATTGTTTTTTGATGAATTTCCACATTTTAACAAGCAAATCATAGAG
AGTTTAAGAGAACCTTTGGAGGATTATAAAATTCATATTTCAAGAGTAAATTCTAAAATCACTTATGAAACAAAATTTAG
CTTTATAGCTGCCCAAAATCCTTGTCCTTGTGGAAATTTATTCTCCAAAAATCTTTCTTGCGTTTGTAGCGAAAATGAGA
TTAAAAAGTATAAAAATCACATTTCAGCTCCTATTATGGATAGGATTGATCTTTATGTAGCTATGGATGAGATCAGCAAG
GATGATAAAGTAAGTATAAGTTCTAAAGAAATGAGTGAAAAAATTTTACAAGCTTTTATTTTTGGTAAAAAACGGGGGCA
AAAAGAATTTAATGGGAAATTAAAAGATGAAGATTTGAGTCGTTTTTGTGTATTGGAAAAAGATGCTAAAGATACGCTAG
ATTTAGCAATTTCACGTTATAATCTTTCTTTGCGATCACTCAATAAAATTTTAAAAGTTTCAAGAAGTATAGCGGATTTA
GAACAAAGTCTTAATATTAACAAAACCCATATTTTAGAAGCTTTAAGCTTTAGAGCAAGGAATTAA

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(198-400)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(407-498)

Subunit ChlI of Mg-chelatase (ChlI)

(18-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Helicobacter pylori 26695

47.495

99.601

0.473