Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   DDG65_RS11810 Genome accession   NZ_CP029032
Coordinates   2251700..2252170 (+) Length   156 a.a.
NCBI ID   WP_000164421.1    Uniprot ID   P65329
Organism   Staphylococcus aureus strain OXLIM     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2246700..2257170
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DDG65_RS11790 coaW 2247009..2247812 (+) 804 WP_000862727.1 type II pantothenate kinase -
  DDG65_RS11795 - 2247942..2248613 (-) 672 WP_000120549.1 DUF2750 domain-containing protein -
  DDG65_RS11800 ldmS 2249012..2250205 (-) 1194 WP_000183726.1 L-aspartate--L-methionine ligase LdmS -
  DDG65_RS11805 - 2250205..2251389 (-) 1185 WP_001291500.1 M20 family metallopeptidase -
  DDG65_RS11810 luxS 2251700..2252170 (+) 471 WP_000164421.1 S-ribosylhomocysteine lyase Regulator
  DDG65_RS11815 - 2252322..2252672 (-) 351 WP_001024035.1 membrane protein -
  DDG65_RS11820 - 2252686..2253987 (-) 1302 WP_001242318.1 pyrimidine-nucleoside phosphorylase -
  DDG65_RS11830 deoC 2254266..2254928 (-) 663 WP_001083316.1 deoxyribose-phosphate aldolase -
  DDG65_RS11835 deoD 2255243..2255953 (+) 711 WP_000160304.1 purine-nucleoside phosphorylase -
  DDG65_RS11840 - 2256074..2256517 (-) 444 WP_000070866.1 Dps family protein -
  DDG65_RS11845 - 2256717..2257130 (-) 414 WP_001123303.1 thiol-disulfide oxidoreductase DCC family protein -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17513.76 Da        Isoelectric Point: 5.4567

>NTDB_id=249835 DDG65_RS11810 WP_000164421.1 2251700..2252170(+) (luxS) [Staphylococcus aureus strain OXLIM]
MTKMNVESFNLDHTKVVAPFIRLAGTMEGLNGDVIHKYDIRFKQPNKEHMDMPGLHSLEHLMAENIRNHSDKVVDLSPMG
CQTGFYVSFINHDNYDDVLNIVEATLNDVLNATEVPACNEVQCGWAASHSLEGAKTIAQAFLDKRNEWHDVFGTGK

Nucleotide


Download         Length: 471 bp        

>NTDB_id=249835 DDG65_RS11810 WP_000164421.1 2251700..2252170(+) (luxS) [Staphylococcus aureus strain OXLIM]
ATGACAAAAATGAATGTTGAAAGTTTCAATTTAGATCATACTAAGGTGGTTGCCCCATTTATTAGATTAGCGGGAACGAT
GGAAGGATTAAACGGAGATGTCATTCACAAATACGACATTCGTTTCAAACAACCAAACAAAGAACATATGGATATGCCCG
GACTACATTCATTAGAACATTTAATGGCTGAAAATATTAGAAATCATAGTGACAAAGTTGTTGATTTAAGTCCTATGGGT
TGCCAAACTGGTTTCTATGTATCATTTATTAATCATGATAATTATGATGATGTATTAAATATTGTTGAAGCAACTTTAAA
TGATGTGCTAAATGCTACTGAAGTGCCTGCTTGTAATGAAGTACAATGTGGCTGGGCAGCAAGTCATTCATTAGAAGGTG
CTAAAACTATCGCTCAAGCATTTCTAGACAAACGAAACGAATGGCATGATGTTTTCGGTACAGGAAAATAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(5-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P65329

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

44.681

90.385

0.404