Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   PFL01_RS05715 Genome accession   NC_007492
Coordinates   1308419..1309426 (+) Length   335 a.a.
NCBI ID   WP_007954831.1    Uniprot ID   A0A345RLF2
Organism   Pseudomonas fluorescens Pf0-1     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 1303419..1314426
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PFL01_RS05690 (Pfl01_1127) ispF 1304276..1304749 (+) 474 WP_007954821.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  PFL01_RS05695 (Pfl01_1128) truD 1304746..1305804 (+) 1059 WP_011332702.1 tRNA pseudouridine(13) synthase TruD -
  PFL01_RS05700 (Pfl01_1129) surE 1305792..1306541 (+) 750 WP_011332703.1 5'/3'-nucleotidase SurE -
  PFL01_RS05705 (Pfl01_1130) - 1306583..1307218 (+) 636 WP_181457888.1 protein-L-isoaspartate(D-aspartate) O-methyltransferase -
  PFL01_RS29055 (Pfl01_1131) - 1307431..1308312 (+) 882 WP_011332705.1 peptidoglycan DD-metalloendopeptidase family protein -
  PFL01_RS05715 (Pfl01_1132) rpoS 1308419..1309426 (+) 1008 WP_007954831.1 RNA polymerase sigma factor RpoS Regulator
  PFL01_RS05720 (Pfl01_1133) fdxA 1309916..1310239 (-) 324 WP_007908827.1 ferredoxin FdxA -
  PFL01_RS05725 (Pfl01_1134) mutS 1310403..1312985 (-) 2583 WP_011332706.1 DNA mismatch repair protein MutS -
  PFL01_RS05730 (Pfl01_1135) - 1313196..1313930 (+) 735 WP_041475154.1 XRE family transcriptional regulator -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 38146.21 Da        Isoelectric Point: 4.8877

>NTDB_id=24972 PFL01_RS05715 WP_007954831.1 1308419..1309426(+) (rpoS) [Pseudomonas fluorescens Pf0-1]
MALSKEVPEFDIDDEVLLMETGIDSDSMSNDEGAAPPSVRAKSKHSASLKQHKYIDYTRALDATQLYLNEIGFSPLLSPE
EEVHFARLSQSGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTI
ERAIMNQTRTIRLPIHVVKELNVYLRAARELTQKLDHEPSPEEIANLLEKPVGEVKRMLGLNERVSSVDVSLGPDSDKTL
LDTLTDDRPTDPCELLQDDDLSQSIDQWLSELTDKQREVVVRRFGLRGHESSTLEDVGLEIGLTRERVRQIQVEGLKRLR
EILEKNGLSSESLFQ

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=24972 PFL01_RS05715 WP_007954831.1 1308419..1309426(+) (rpoS) [Pseudomonas fluorescens Pf0-1]
ATGGCTCTCAGTAAAGAAGTGCCGGAGTTTGACATCGACGATGAGGTTCTCCTGATGGAGACCGGCATCGATTCGGATTC
GATGTCGAATGATGAAGGGGCTGCTCCACCTTCCGTTCGTGCCAAATCCAAACACTCCGCTTCACTTAAACAACATAAGT
ACATCGATTACACTCGGGCACTCGATGCCACGCAGCTGTACCTCAACGAAATCGGCTTTTCCCCACTGCTCTCCCCGGAA
GAAGAAGTTCATTTTGCGCGCTTGTCGCAAAGTGGCGATCCTGCCGGGCGCAAGCGCATGATCGAAAGTAACCTGCGGCT
GGTGGTCAAGATCGCCCGGCGTTACGTCAATCGGGGGCTGTCGCTGCTGGATCTGATCGAAGAGGGCAACCTCGGACTGA
TCCGAGCGGTGGAAAAGTTCGATCCTGAGCGCGGCTTCCGCTTCTCGACCTACGCAACCTGGTGGATTCGTCAGACCATC
GAACGCGCGATCATGAATCAGACCCGGACCATCCGGCTGCCGATTCATGTGGTCAAGGAACTCAACGTGTACCTGCGGGC
TGCACGGGAGCTGACGCAAAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAAAAACCGGTGGGCG
AGGTCAAGCGCATGCTGGGCCTGAACGAGCGGGTTTCTTCGGTCGACGTCTCGCTGGGTCCGGATTCGGATAAAACCCTG
CTGGACACCCTGACGGATGACCGTCCGACTGATCCGTGCGAACTGCTGCAGGATGACGATCTGTCGCAGAGCATCGATCA
ATGGCTCTCGGAGCTGACCGACAAGCAACGCGAGGTGGTGGTACGCCGCTTCGGTCTGCGCGGCCACGAGAGCAGCACGC
TGGAAGATGTAGGCCTGGAGATCGGCCTGACCCGGGAACGGGTGAGACAGATCCAGGTGGAAGGCCTTAAGCGCCTTCGG
GAAATTCTCGAGAAAAACGGCCTGTCGAGCGAGTCGCTGTTTCAATAA

Domains

Predicted by InterProScan.

Sigma-70, region 4 (Sigma70_r4)

(268-321)

Sigma-70 region 3 (Sigma70_r3)

(180-254)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(62-94)

Sigma-70 region 2 (Sigma70_r2)

(100-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A345RLF2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

65.672

100

0.657

Multiple sequence alignment