Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   CQJ38_RS13070 Genome accession   NZ_CP023748
Coordinates   2653025..2653777 (-) Length   250 a.a.
NCBI ID   WP_098081628.1    Uniprot ID   -
Organism   Bacillus velezensis strain LABIM40     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2648025..2658777
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CQJ38_RS13045 (CQJ38_13045) mreC 2648461..2649324 (-) 864 WP_007408166.1 rod shape-determining protein MreC -
  CQJ38_RS13050 (CQJ38_13050) mreB 2649355..2650368 (-) 1014 WP_003152647.1 cell shape-determining protein MreB -
  CQJ38_RS13055 (CQJ38_13055) radC 2650460..2651155 (-) 696 WP_007408165.1 RadC family protein -
  CQJ38_RS13060 (CQJ38_13060) - 2651187..2651756 (-) 570 WP_007408164.1 Maf family protein -
  CQJ38_RS13065 (CQJ38_13065) - 2651897..2652898 (-) 1002 WP_098081627.1 SPOR domain-containing protein -
  CQJ38_RS13070 (CQJ38_13070) comC 2653025..2653777 (-) 753 WP_098081628.1 prepilin peptidase Machinery gene
  CQJ38_RS13075 (CQJ38_13075) - 2653917..2655209 (-) 1293 WP_098081629.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  CQJ38_RS13080 (CQJ38_13080) - 2655268..2657910 (-) 2643 WP_098081630.1 valine--tRNA ligase -
  CQJ38_RS13085 (CQJ38_13085) - 2658363..2658554 (+) 192 WP_003152639.1 hypothetical protein -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27353.09 Da        Isoelectric Point: 9.5936

>NTDB_id=249706 CQJ38_RS13070 WP_098081628.1 2653025..2653777(-) (comC) [Bacillus velezensis strain LABIM40]
MLLILFFLGLIFGSFFYTAACRIPFRISVISPRSACSFCRLPLSWRELVPVVSYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLVALLFLSLLMIVTMTDLQYMLIPDKVLLFFLPLFIAGRMFSPLDSWYAGFAGAVCGFFLLVFI
MFVSKGGIGAGDVKLFGVIGLTLGVKLVLIAFFLSVMIGAVYGMCAAARGRLGKKQPFPFAPAISAGSALSYLYGEELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=249706 CQJ38_RS13070 WP_098081628.1 2653025..2653777(-) (comC) [Bacillus velezensis strain LABIM40]
GTGCTTTTGATTCTGTTTTTTCTCGGTTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGTTTCGAAT
CTCGGTTATTTCGCCGCGTTCAGCCTGTTCGTTTTGCCGCTTGCCGCTCTCCTGGAGGGAGCTTGTGCCCGTCGTTTCCT
ATATTCTGCAAAGAGGCAGATGCAGAAACTGCCGTGCAAAGCTGTCGGTTATGTATCCGGCGGCGGAATGCTGGACGGCA
TGTTTATTCACGGCTGCAGGTATTCATTTCGGTTTCTCAAAAGAACTGTTAGTCGCGCTGTTATTTCTGTCTCTGCTCAT
GATTGTTACTATGACGGATCTGCAATATATGCTGATTCCTGACAAGGTTCTGCTGTTTTTTCTTCCGCTTTTTATCGCCG
GCCGTATGTTTTCTCCGCTGGATTCATGGTATGCAGGGTTTGCCGGAGCCGTTTGCGGATTTTTTCTGCTTGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGACGCTCGGCGTGAAGCT
CGTGCTCATTGCATTCTTTCTTTCCGTTATGATCGGAGCCGTATACGGTATGTGCGCCGCAGCCCGGGGCAGGCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGCCGGGAGCGCTTTGAGTTATTTATACGGTGAAGAGCTGTTTTCG
TTTTACATCAAGCTCGCTTCAGGCGGGGCTTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(101-204)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

58.468

99.2

0.58

Multiple sequence alignment