Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   CQJ38_RS10665 Genome accession   NZ_CP023748
Coordinates   2169790..2170398 (+) Length   202 a.a.
NCBI ID   WP_012117837.1    Uniprot ID   A0AAP5V0D3
Organism   Bacillus velezensis strain LABIM40     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2164790..2175398
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CQJ38_RS10625 (CQJ38_10625) - 2165843..2166349 (-) 507 WP_012117833.1 PTS glucose transporter subunit IIA -
  CQJ38_RS10630 (CQJ38_10630) - 2166488..2166901 (+) 414 WP_017418017.1 Hsp20/alpha crystallin family protein -
  CQJ38_RS10635 (CQJ38_10635) - 2166931..2167365 (-) 435 WP_025284916.1 YppG family protein -
  CQJ38_RS10640 (CQJ38_10640) - 2167552..2167734 (+) 183 WP_003153532.1 YppF family protein -
  CQJ38_RS10645 (CQJ38_10645) - 2167773..2168141 (-) 369 WP_098081526.1 YppE family protein -
  CQJ38_RS10650 (CQJ38_10650) - 2168187..2168432 (-) 246 WP_015240083.1 DUF5446 family protein -
  CQJ38_RS10655 (CQJ38_10655) sspM 2168638..2168742 (+) 105 WP_003153525.1 acid-soluble spore protein SspM -
  CQJ38_RS10660 (CQJ38_10660) - 2168786..2169748 (-) 963 WP_014418234.1 DUF2515 domain-containing protein -
  CQJ38_RS10665 (CQJ38_10665) recU 2169790..2170398 (+) 609 WP_012117837.1 Holliday junction resolvase RecU Machinery gene
  CQJ38_RS10670 (CQJ38_10670) - 2170437..2173220 (+) 2784 WP_098081527.1 PBP1A family penicillin-binding protein -
  CQJ38_RS10675 (CQJ38_10675) - 2173297..2173788 (-) 492 WP_032870046.1 YpoC family protein -
  CQJ38_RS10680 (CQJ38_10680) nth 2173785..2174444 (-) 660 WP_060562797.1 endonuclease III -
  CQJ38_RS10685 (CQJ38_10685) dnaD 2174463..2175161 (-) 699 WP_003153516.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23666.75 Da        Isoelectric Point: 9.5778

>NTDB_id=249688 CQJ38_RS10665 WP_012117837.1 2169790..2170398(+) (recU) [Bacillus velezensis strain LABIM40]
MIRYPNGKTFQPNKTVSSQNSQKRSHSYSNRGMTLEDDLNETNKYYLANQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLQNFHDHQIEHMKQVVRQDGICFVIISAFGKVYFLEADKLFVFWERKE
NNGRKSIRKDELEDASFPISLGYSPRIDYISIIEQLYFSQEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=249688 CQJ38_RS10665 WP_012117837.1 2169790..2170398(+) (recU) [Bacillus velezensis strain LABIM40]
GTGATTCGGTACCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGGTCCCATTC
ATACAGTAATCGCGGCATGACCCTCGAAGACGACCTGAATGAAACGAATAAGTATTATCTGGCTAACCAAATTGCTGTCA
TTCACAAAAAGCCGACACCCGTCCAGATTGTAAACGTCCACTATCCGAAAAGAAGCGCCGCAGTCATTAAGGAAGCTTAT
TTTAAACAGTCTTCAACAACTGACTACAACGGCATTTATAAAGGGCGCTACATTGATTTTGAGGCAAAAGAAACAAAAAA
CAAAACGGCATTTCCCCTGCAGAATTTTCATGATCATCAGATTGAGCATATGAAGCAGGTGGTCAGACAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGGAAAGGTTTATTTCCTCGAAGCCGACAAGCTGTTTGTCTTTTGGGAGAGAAAGGAG
AACAATGGCAGAAAATCGATTCGCAAAGACGAATTAGAAGATGCTTCCTTTCCGATTTCCCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGAACAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

90.452

98.515

0.891

Multiple sequence alignment