Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   CQJ38_RS07230 Genome accession   NZ_CP023748
Coordinates   1365008..1365604 (+) Length   198 a.a.
NCBI ID   WP_012117447.1    Uniprot ID   -
Organism   Bacillus velezensis strain LABIM40     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1360008..1370604
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CQJ38_RS07200 (CQJ38_07200) - 1360220..1360675 (+) 456 WP_007409622.1 flavodoxin -
  CQJ38_RS07205 (CQJ38_07205) dapD 1360757..1361467 (+) 711 WP_098081372.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  CQJ38_RS07210 (CQJ38_07210) - 1361538..1362662 (+) 1125 WP_012117444.1 N-acetyldiaminopimelate deacetylase -
  CQJ38_RS07215 (CQJ38_07215) - 1362723..1362968 (+) 246 WP_003154596.1 YkuS family protein -
  CQJ38_RS07220 (CQJ38_07220) - 1363002..1363808 (-) 807 WP_098081373.1 mechanosensitive ion channel family protein -
  CQJ38_RS07225 (CQJ38_07225) - 1364097..1364555 (+) 459 WP_098081374.1 TlpA disulfide reductase family protein -
  CQJ38_RS07230 (CQJ38_07230) rok 1365008..1365604 (+) 597 WP_012117447.1 transcriptional regulator Rok Regulator
  CQJ38_RS07235 (CQJ38_07235) - 1365625..1366617 (-) 993 WP_098081375.1 sporulation protein -
  CQJ38_RS07240 (CQJ38_07240) - 1366763..1367365 (+) 603 WP_098081376.1 molybdenum cofactor guanylyltransferase -
  CQJ38_RS07245 (CQJ38_07245) - 1367417..1368436 (+) 1020 WP_098081377.1 molybdopterin-synthase adenylyltransferase MoeB -
  CQJ38_RS07250 (CQJ38_07250) glp 1368454..1369746 (+) 1293 WP_098081378.1 gephyrin-like molybdotransferase Glp -
  CQJ38_RS07255 (CQJ38_07255) mobB 1369707..1370228 (+) 522 WP_007409631.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22495.54 Da        Isoelectric Point: 9.6909

>NTDB_id=249681 CQJ38_RS07230 WP_012117447.1 1365008..1365604(+) (rok) [Bacillus velezensis strain LABIM40]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDNTGSLSDTKKEFRPEKKSDSLPVLAELAAQEMRSYQKPQ
AQPQSSQPQMQSITSLPAGIPDGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFM
QSLIKMYPEVKKPYRGQYILEGEISQETAETANDTAAE

Nucleotide


Download         Length: 597 bp        

>NTDB_id=249681 CQJ38_RS07230 WP_012117447.1 1365008..1365604(+) (rok) [Bacillus velezensis strain LABIM40]
ATGTTTAATGAAAGAGAAGCGCTGCGCTTACGTTTAGAACAATTGAACGAAGCAGAGGTAAAAGTCATTCGTGAATATCA
AATAGAACGTGATAAAATATATGCAAAACTGAGAGAATTAGACAATACAGGCAGCCTGTCCGATACAAAAAAAGAGTTTC
GTCCGGAGAAAAAAAGTGACTCTCTCCCGGTGCTTGCAGAGCTTGCAGCACAGGAAATGAGAAGCTATCAAAAGCCGCAG
GCACAGCCTCAATCCTCCCAGCCGCAGATGCAGTCTATTACGTCTCTTCCCGCCGGCATTCCAGACGGTTCTACAAGAAG
AAGAAGAGGGACGGCGAGACCGGGATCAAAAGCGGCAAAACTGCGCGAAGCAGCGATTAAAACATTGAAACGCCACAATG
CAGCGATCAAAAGTTCCGAACTGCAAAAGGAAATTGAAAAGGAAAGCGGCCTTGAAATTCCTAATATGACAACATTTATG
CAAAGCTTAATTAAAATGTATCCGGAAGTGAAAAAACCATACCGCGGCCAATATATTCTTGAGGGAGAAATTTCTCAGGA
AACAGCAGAAACGGCAAATGATACGGCTGCTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

86.082

97.98

0.843

Multiple sequence alignment