Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   CQJ38_RS05200 Genome accession   NZ_CP023748
Coordinates   1003765..1004343 (+) Length   192 a.a.
NCBI ID   WP_003155179.1    Uniprot ID   G1BIW7
Organism   Bacillus velezensis strain LABIM40     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 998765..1009343
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CQJ38_RS20550 - 999265..999780 (-) 516 WP_370529535.1 methyl-accepting chemotaxis protein -
  CQJ38_RS20555 - 1000024..1000683 (-) 660 Protein_959 protoglobin domain-containing protein -
  CQJ38_RS05185 (CQJ38_05185) - 1000680..1002203 (-) 1524 WP_069007026.1 FAD-dependent oxidoreductase -
  CQJ38_RS05190 (CQJ38_05190) - 1002328..1003185 (+) 858 WP_015239527.1 SDR family oxidoreductase -
  CQJ38_RS05195 (CQJ38_05195) - 1003216..1003449 (-) 234 WP_012117233.1 IDEAL domain-containing protein -
  CQJ38_RS05200 (CQJ38_05200) comK 1003765..1004343 (+) 579 WP_003155179.1 competence protein ComK Regulator
  CQJ38_RS05205 (CQJ38_05205) - 1004489..1004857 (+) 369 WP_012117235.1 iron chaperone -
  CQJ38_RS05210 (CQJ38_05210) - 1004884..1005255 (+) 372 WP_015239528.1 iron chaperone -
  CQJ38_RS05215 (CQJ38_05215) - 1005378..1005885 (+) 508 Protein_966 MepB family protein -
  CQJ38_RS05220 (CQJ38_05220) - 1006114..1006824 (-) 711 WP_098081265.1 YrpD family protein -
  CQJ38_RS05225 (CQJ38_05225) - 1007020..1007289 (+) 270 WP_003155168.1 excalibur calcium-binding domain-containing protein -
  CQJ38_RS05230 (CQJ38_05230) - 1007321..1007638 (-) 318 WP_003155166.1 YbjQ family protein -
  CQJ38_RS05235 (CQJ38_05235) - 1007680..1009149 (-) 1470 WP_007409182.1 sodium:solute symporter family protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22315.58 Da        Isoelectric Point: 8.1419

>NTDB_id=249668 CQJ38_RS05200 WP_003155179.1 1003765..1004343(+) (comK) [Bacillus velezensis strain LABIM40]
MCQKTHAPLESYEVNRSTIAVLPEEIDGKMGSKVIEKDCILYVSMKPIHIIDRSCRYFGSSYAGRKAGTYEAIKISHKPP
IMVDPSNHIFLFPTLSSARPQCGWISHVHVKDFQPTAFDDTAVTFSNGKTMELEVSYHSFENQVYRTAYLRTTFQDRMGS
HIPKRQEFMLYPKEERTRMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=249668 CQJ38_RS05200 WP_003155179.1 1003765..1004343(+) (comK) [Bacillus velezensis strain LABIM40]
ATGTGCCAGAAAACACACGCACCCTTAGAAAGCTACGAAGTAAATCGTTCAACCATCGCTGTTTTGCCTGAGGAAATAGA
CGGTAAAATGGGGTCGAAGGTCATTGAAAAAGACTGCATTCTGTATGTCAGCATGAAGCCGATTCACATCATCGACAGAA
GCTGCCGCTATTTTGGCTCCAGCTATGCCGGGAGAAAAGCGGGAACATATGAAGCGATTAAAATTTCTCACAAGCCGCCG
ATTATGGTGGACCCTTCAAATCACATCTTTTTATTCCCTACACTTTCTTCTGCAAGGCCTCAATGCGGCTGGATATCTCA
TGTGCACGTTAAAGATTTTCAACCGACGGCATTTGATGACACAGCGGTCACGTTCTCAAACGGCAAAACGATGGAACTGG
AAGTATCCTATCATTCTTTTGAAAATCAGGTTTACAGAACCGCCTATCTCAGAACCACTTTTCAGGACAGGATGGGCAGT
CATATCCCGAAGCGGCAGGAATTCATGCTGTATCCGAAAGAAGAGCGGACAAGAATGATCTACGACTTTATTTTGCGGGA
GCTGGGGGAGAGATATTAG

Domains

Predicted by InterProScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

82.292

100

0.823

Multiple sequence alignment