Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   CQJ38_RS04110 Genome accession   NZ_CP023748
Coordinates   810975..811766 (+) Length   263 a.a.
NCBI ID   WP_080130760.1    Uniprot ID   -
Organism   Bacillus velezensis strain LABIM40     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 805975..816766
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CQJ38_RS04085 (CQJ38_04085) - 807969..808853 (+) 885 WP_098081189.1 PhzF family phenazine biosynthesis isomerase -
  CQJ38_RS04090 (CQJ38_04090) - 808930..809514 (+) 585 WP_007408549.1 nitroreductase -
  CQJ38_RS04095 (CQJ38_04095) - 809554..809745 (-) 192 WP_003155508.1 YfhD family protein -
  CQJ38_RS04100 (CQJ38_04100) - 809816..809926 (-) 111 WP_003155504.1 YfhE family protein -
  CQJ38_RS04105 (CQJ38_04105) - 809984..810883 (-) 900 WP_098081190.1 TIGR01777 family oxidoreductase -
  CQJ38_RS04110 (CQJ38_04110) recX 810975..811766 (+) 792 WP_080130760.1 recombination regulator RecX Regulator
  CQJ38_RS04115 (CQJ38_04115) - 811773..812087 (+) 315 WP_007408553.1 YfhH family protein -
  CQJ38_RS04120 (CQJ38_04120) - 812231..813424 (+) 1194 WP_076983952.1 MFS transporter -
  CQJ38_RS04125 (CQJ38_04125) - 813464..813853 (-) 390 WP_039062791.1 DUF2606 family protein -
  CQJ38_RS04130 (CQJ38_04130) - 813816..814727 (-) 912 WP_015239429.1 trypsin-like serine peptidase -
  CQJ38_RS04135 (CQJ38_04135) - 814874..815026 (-) 153 WP_003155495.1 small, acid-soluble spore protein K -
  CQJ38_RS04140 (CQJ38_04140) - 815150..815419 (+) 270 WP_003155492.1 YfhJ family protein -
  CQJ38_RS04145 (CQJ38_04145) - 815552..816079 (+) 528 WP_015239430.1 SH3 domain-containing protein -
  CQJ38_RS04150 (CQJ38_04150) - 816165..816500 (+) 336 WP_063095999.1 SdpI family protein -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 30921.08 Da        Isoelectric Point: 5.8035

>NTDB_id=249663 CQJ38_RS04110 WP_080130760.1 810975..811766(+) (recX) [Bacillus velezensis strain LABIM40]
MPFITKISTQKKNTERFNIFLDEKYAFSVDADVLVRFDLKKGKELDELDILEIQYGDDVKKAFNRAVEFLSYRMRSEKEV
RDHLKKKETPDMVISEVIHKLYDYSYLNDKEFAEAYASTHKKTNGKGPDVLFRELKAKGIDDDTIKETLSAFSFDEQIQE
ALKHIGKILKKDKKLSTKEIRQRAQMQLQRKGFPFDVINAALEQTEYENDDEAEMEALKAHAEKAIRKYRYDGSYESGMK
VKQYLFRKGFSIDDIDQFLQEEE

Nucleotide


Download         Length: 792 bp        

>NTDB_id=249663 CQJ38_RS04110 WP_080130760.1 810975..811766(+) (recX) [Bacillus velezensis strain LABIM40]
ATGCCGTTTATTACAAAAATATCGACCCAAAAGAAAAATACCGAGCGCTTCAACATCTTTCTTGATGAGAAATATGCATT
CAGCGTCGACGCCGACGTGCTTGTGCGTTTTGACCTGAAAAAAGGGAAAGAACTGGACGAGCTTGACATTCTTGAAATCC
AGTACGGCGATGACGTGAAAAAAGCCTTTAACCGCGCCGTAGAATTTTTATCATACCGGATGCGCTCTGAAAAAGAAGTC
CGGGATCATCTGAAGAAAAAAGAAACGCCGGACATGGTCATTTCTGAAGTCATCCATAAACTGTACGATTACAGCTACTT
AAATGACAAAGAATTTGCCGAAGCCTATGCGAGCACCCACAAAAAAACAAACGGCAAAGGCCCTGACGTCCTGTTCCGCG
AGCTGAAAGCGAAAGGAATAGACGACGATACCATCAAGGAGACGCTCAGTGCGTTTTCATTTGATGAGCAGATACAAGAA
GCGCTGAAACATATCGGCAAAATCCTGAAAAAAGACAAAAAGCTGTCCACAAAAGAGATCAGACAGCGGGCGCAGATGCA
GCTTCAGCGAAAAGGTTTCCCTTTTGACGTCATCAATGCCGCTCTGGAACAGACGGAGTATGAAAATGATGATGAAGCCG
AGATGGAAGCTCTGAAGGCTCATGCGGAAAAAGCGATCAGGAAATACCGCTATGACGGCAGCTATGAAAGCGGAATGAAG
GTTAAACAGTACTTATTCAGAAAAGGATTCTCGATTGACGATATTGATCAATTCTTGCAGGAAGAGGAGTAA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

79.848

100

0.798

Multiple sequence alignment