Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   CQJ38_RS01730 Genome accession   NZ_CP023748
Coordinates   323514..323951 (-) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus velezensis strain LABIM40     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 318514..328951
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CQJ38_RS01705 (CQJ38_01705) - 319534..320670 (+) 1137 WP_007609290.1 zinc-dependent alcohol dehydrogenase -
  CQJ38_RS01710 (CQJ38_01710) - 320685..321119 (+) 435 WP_063096155.1 RDD family protein -
  CQJ38_RS01715 (CQJ38_01715) - 321236..321514 (+) 279 WP_372675491.1 YckD family protein -
  CQJ38_RS01720 (CQJ38_01720) - 321618..323054 (+) 1437 WP_098080961.1 glycoside hydrolase family 1 protein -
  CQJ38_RS01725 (CQJ38_01725) nin/comJ 323095..323493 (-) 399 WP_020955304.1 competence protein ComJ Regulator
  CQJ38_RS01730 (CQJ38_01730) nucA/comI 323514..323951 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  CQJ38_RS01735 (CQJ38_01735) hxlB 324311..324868 (-) 558 WP_007409354.1 6-phospho-3-hexuloisomerase -
  CQJ38_RS01740 (CQJ38_01740) hxlA 324865..325500 (-) 636 WP_025284209.1 3-hexulose-6-phosphate synthase -
  CQJ38_RS01745 (CQJ38_01745) - 325732..326094 (+) 363 WP_007409352.1 winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=249658 CQJ38_RS01730 WP_003156588.1 323514..323951(-) (nucA/comI) [Bacillus velezensis strain LABIM40]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=249658 CQJ38_RS01730 WP_003156588.1 323514..323951(-) (nucA/comI) [Bacillus velezensis strain LABIM40]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCTTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGACATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCCGTCAAAACGGGATACGATAGAGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAATAATGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641

Multiple sequence alignment