Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   CQJ38_RS00190 Genome accession   NZ_CP023748
Coordinates   31222..31512 (-) Length   96 a.a.
NCBI ID   WP_198404711.1    Uniprot ID   -
Organism   Bacillus velezensis strain LABIM40     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 26222..36512
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CQJ38_RS00150 (CQJ38_00150) darA 26239..26568 (+) 330 WP_004264734.1 cyclic di-AMP receptor DarA -
  CQJ38_RS00155 (CQJ38_00155) - 26581..27021 (+) 441 WP_004264730.1 YaaR family protein -
  CQJ38_RS00160 (CQJ38_00160) holB 27033..28022 (+) 990 WP_007409919.1 DNA polymerase III subunit delta' -
  CQJ38_RS00165 (CQJ38_00165) ricT 28025..28852 (+) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  CQJ38_RS00170 (CQJ38_00170) yabA 28867..29226 (+) 360 WP_004264720.1 replication initiation-control protein YabA -
  CQJ38_RS00175 (CQJ38_00175) - 29287..30030 (+) 744 WP_004264717.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  CQJ38_RS00180 (CQJ38_00180) - 30017..30316 (+) 300 WP_007409921.1 GIY-YIG nuclease family protein -
  CQJ38_RS00185 (CQJ38_00185) rsmI 30291..31172 (+) 882 WP_011996168.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  CQJ38_RS00190 (CQJ38_00190) abrB 31222..31512 (-) 291 WP_198404711.1 transition state genes transcriptional regulator AbrB Regulator
  CQJ38_RS00195 (CQJ38_00195) metG 31996..33987 (+) 1992 WP_060561979.1 methionine--tRNA ligase -
  CQJ38_RS00200 (CQJ38_00200) - 34063..34830 (+) 768 WP_098080863.1 TatD family hydrolase -
  CQJ38_RS00205 (CQJ38_00205) - 34965..36290 (+) 1326 WP_023356663.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10762.58 Da        Isoelectric Point: 6.9816

>NTDB_id=249653 CQJ38_RS00190 WP_198404711.1 31222..31512(-) (abrB) [Bacillus velezensis strain LABIM40]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNHLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=249653 CQJ38_RS00190 WP_198404711.1 31222..31512(-) (abrB) [Bacillus velezensis strain LABIM40]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTCGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCATCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-91)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

96.875

100

0.969

Multiple sequence alignment