Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   CPQ91_RS22940 Genome accession   NZ_CP023729
Coordinates   1514640..1515047 (-) Length   135 a.a.
NCBI ID   WP_003181205.1    Uniprot ID   -
Organism   Bacillus licheniformis strain ATCC 9789     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1509640..1520047
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CPQ91_RS07760 (CPQ91_07760) queC 1510792..1511451 (+) 660 WP_003181098.1 7-cyano-7-deazaguanine synthase QueC -
  CPQ91_RS07765 (CPQ91_07765) queD 1511454..1511894 (+) 441 WP_003181100.1 6-carboxytetrahydropterin synthase QueD -
  CPQ91_RS07770 (CPQ91_07770) queE 1511887..1512618 (+) 732 WP_003181103.1 7-carboxy-7-deazaguanine synthase QueE -
  CPQ91_RS07775 (CPQ91_07775) queF 1512640..1513137 (+) 498 WP_009328607.1 preQ(1) synthase -
  CPQ91_RS22780 - 1513810..1513935 (-) 126 WP_016885803.1 hypothetical protein -
  CPQ91_RS22935 - 1514199..1514582 (-) 384 WP_373924866.1 tetratricopeptide repeat protein -
  CPQ91_RS22940 rapC 1514640..1515047 (-) 408 WP_003181205.1 RapH N-terminal domain-containing protein Regulator
  CPQ91_RS07785 (CPQ91_07785) - 1515430..1516221 (-) 792 WP_003181208.1 DUF817 domain-containing protein -
  CPQ91_RS07790 (CPQ91_07790) - 1516351..1516572 (-) 222 WP_003181209.1 helix-turn-helix domain-containing protein -
  CPQ91_RS07795 (CPQ91_07795) - 1516583..1517065 (-) 483 WP_003181211.1 DUF2975 domain-containing protein -
  CPQ91_RS07800 (CPQ91_07800) - 1517603..1517869 (-) 267 WP_171970000.1 hypothetical protein -
  CPQ91_RS07805 (CPQ91_07805) - 1517947..1519379 (-) 1433 Protein_1490 lipase family protein -
  CPQ91_RS07810 (CPQ91_07810) - 1519424..1519768 (+) 345 WP_003181219.1 DUF1433 domain-containing protein -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 16372.04 Da        Isoelectric Point: 6.4838

>NTDB_id=249625 CPQ91_RS22940 WP_003181205.1 1514640..1515047(-) (rapC) [Bacillus licheniformis strain ATCC 9789]
MKQLIPSSKVGVKIHEWYKMIREFSVPDAEALKEEVEKEINQMEEDQDLLLYYQLMCFRHQLMLEYLEPTNKRKQGQSIN
KLLAQIEEPRRDLNGLLSYYSFFFRGMYEFEKKQYIKAIEFYRNAEKQLALITML

Nucleotide


Download         Length: 408 bp        

>NTDB_id=249625 CPQ91_RS22940 WP_003181205.1 1514640..1515047(-) (rapC) [Bacillus licheniformis strain ATCC 9789]
GTGAAACAGTTAATACCCTCGTCAAAAGTCGGAGTGAAAATCCACGAATGGTATAAAATGATAAGAGAGTTTAGCGTACC
GGATGCAGAGGCTTTAAAAGAAGAAGTAGAGAAGGAAATTAATCAAATGGAAGAAGATCAGGACTTACTCCTTTACTATC
AGTTGATGTGTTTTAGACATCAATTAATGTTAGAATATTTAGAACCTACTAACAAAAGAAAACAAGGACAATCAATAAAC
AAATTGTTGGCCCAAATCGAGGAGCCTCGAAGAGATTTAAATGGCCTCCTTAGTTACTACTCATTTTTCTTTAGGGGCAT
GTATGAATTTGAGAAAAAACAGTACATCAAAGCAATAGAGTTTTATCGAAACGCAGAAAAACAGTTGGCTCTCATTACGA
TGTTATAG

Domains

Predicted by InterproScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

54.545

97.778

0.533
  rapF Bacillus subtilis subsp. subtilis str. 168

51.493

99.259

0.511

Multiple sequence alignment