Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   CPQ91_RS13580 Genome accession   NZ_CP023729
Coordinates   2600138..2600908 (-) Length   256 a.a.
NCBI ID   WP_097366403.1    Uniprot ID   -
Organism   Bacillus licheniformis strain ATCC 9789     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2595138..2605908
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CPQ91_RS13560 (CPQ91_13560) - 2595212..2596024 (-) 813 WP_003183615.1 pyruvate, water dikinase regulatory protein -
  CPQ91_RS13565 (CPQ91_13565) - 2596050..2596688 (-) 639 WP_025804968.1 helix-turn-helix transcriptional regulator -
  CPQ91_RS13570 (CPQ91_13570) glyS 2596886..2598925 (-) 2040 WP_009327872.1 glycine--tRNA ligase subunit beta -
  CPQ91_RS13575 (CPQ91_13575) glyQ 2598918..2599805 (-) 888 WP_003183621.1 glycine--tRNA ligase subunit alpha -
  CPQ91_RS13580 (CPQ91_13580) recO 2600138..2600908 (-) 771 WP_097366403.1 DNA repair protein RecO Machinery gene
  CPQ91_RS13585 (CPQ91_13585) - 2600946..2601089 (-) 144 WP_003183626.1 YqzL family protein -
  CPQ91_RS13590 (CPQ91_13590) era 2601251..2602156 (-) 906 WP_009327871.1 GTPase Era -
  CPQ91_RS13595 (CPQ91_13595) - 2602137..2602547 (-) 411 WP_017474320.1 cytidine deaminase -
  CPQ91_RS13600 (CPQ91_13600) - 2602679..2603059 (-) 381 WP_003183633.1 diacylglycerol kinase family protein -
  CPQ91_RS13605 (CPQ91_13605) ybeY 2603037..2603513 (-) 477 WP_061578532.1 rRNA maturation RNase YbeY -
  CPQ91_RS13610 (CPQ91_13610) - 2603510..2605564 (-) 2055 WP_225315881.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29404.01 Da        Isoelectric Point: 8.3083

>NTDB_id=249597 CPQ91_RS13580 WP_097366403.1 2600138..2600908(-) (recO) [Bacillus licheniformis strain ATCC 9789]
MLTKCEGIVLRTNDYGETNKIITLLTREHGKIGVLARGAKKPNSRLSAISQPFLYASFLFRKSSGLGTLEQGEMIESMRN
IREDLFLTAYAAYIAELIDKGTEEKKPNPFLFELLLQSMRRLNDGTDPDIIANLIEVKMLSVMGLYPELDECVHCKSKDG
TFHFSISDNGFICHRCFAKDPYRIPLSPASARLLRLFFYFDLSRLGNVSVKQETKDELKRVIQTYYDEYSGIYLKSRRFM
EQMDNMKKMLGDENKS

Nucleotide


Download         Length: 771 bp        

>NTDB_id=249597 CPQ91_RS13580 WP_097366403.1 2600138..2600908(-) (recO) [Bacillus licheniformis strain ATCC 9789]
ATGCTGACGAAATGTGAAGGTATCGTCCTTCGTACAAACGACTATGGTGAAACAAATAAGATCATTACGCTATTGACGAG
AGAACACGGGAAAATCGGTGTGCTGGCAAGGGGCGCCAAAAAGCCGAACAGCCGCTTGTCAGCGATTTCCCAGCCGTTCC
TTTATGCATCTTTTTTATTCCGCAAATCATCCGGCCTCGGCACATTGGAGCAGGGCGAGATGATCGAAAGCATGAGGAAT
ATCCGCGAGGATCTGTTTTTAACAGCTTACGCGGCCTACATCGCTGAATTAATCGACAAGGGAACGGAGGAAAAGAAACC
GAATCCGTTTTTATTTGAGCTGCTGCTTCAGTCAATGAGGAGGCTGAATGACGGTACAGATCCCGACATTATCGCCAACC
TCATCGAAGTCAAAATGCTCAGCGTGATGGGGCTGTATCCGGAGCTGGATGAATGTGTGCACTGCAAAAGCAAAGACGGC
ACATTTCATTTTTCGATCAGCGACAACGGCTTTATCTGCCACCGCTGTTTTGCGAAAGATCCATACAGGATACCGCTGTC
TCCCGCATCCGCCAGGCTGTTGAGACTGTTTTTTTATTTTGACCTGTCAAGGCTCGGAAATGTCTCGGTCAAACAGGAGA
CGAAGGATGAGCTGAAAAGGGTTATTCAGACGTACTATGACGAGTACTCAGGGATCTACCTGAAATCGCGGCGCTTCATG
GAACAAATGGACAATATGAAAAAGATGCTGGGCGATGAAAACAAAAGTTGA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(82-238)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

77.734

100

0.777

Multiple sequence alignment