Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   GMET_RS16425 Genome accession   NC_007517
Coordinates   3686298..3687638 (+) Length   446 a.a.
NCBI ID   WP_035468633.1    Uniprot ID   -
Organism   Geobacter metallireducens GS-15     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3681298..3692638
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GMET_RS16405 (Gmet_3273) - 3681999..3682319 (-) 321 WP_004512710.1 hypothetical protein -
  GMET_RS16410 (Gmet_3274) - 3682501..3683085 (+) 585 WP_011366171.1 HEAT repeat domain-containing protein -
  GMET_RS16415 (Gmet_3275) - 3683108..3684454 (-) 1347 WP_011366172.1 HD-GYP domain-containing protein -
  GMET_RS16420 (Gmet_3276) - 3684447..3686120 (-) 1674 WP_011366173.1 HEAT repeat domain-containing protein -
  GMET_RS16425 (Gmet_3277) radA 3686298..3687638 (+) 1341 WP_035468633.1 DNA repair protein RadA Machinery gene
  GMET_RS16430 (Gmet_3278) dksA 3687740..3688096 (+) 357 WP_004512716.1 RNA polymerase-binding protein DksA -
  GMET_RS16435 (Gmet_3279) - 3688154..3689980 (+) 1827 WP_004512717.1 ATP-binding protein -
  GMET_RS19310 - 3690483..3690605 (-) 123 Protein_3321 IS5/IS1182 family transposase -
  GMET_RS16445 (Gmet_3281) istB 3690629..3691423 (-) 795 WP_004514800.1 IS21-like element ISGme4 family helper ATPase IstB -
  GMET_RS16450 (Gmet_3282) istA 3691420..3692445 (-) 1026 WP_004514801.1 IS21-like element ISGme4 family transposase -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 46771.20 Da        Isoelectric Point: 6.4999

>NTDB_id=24958 GMET_RS16425 WP_035468633.1 3686298..3687638(+) (radA) [Geobacter metallireducens GS-15]
MTLYVCQNCGYQSAKWLGKCPDCSAWNSLVEEVRGKGKGPSAPLSGVAPVPICDVAGEAEERLPCGISEFDRVLGGGLVA
GSVILIGGDPGIGKSTLLLQVMDHLARTVGPVLYVSGEESARQARLRGERLGIRAKELLILAETALETVLAQIGAVAPRA
VVIDSIQTMYAPGLESAPGSVSQVRECAGRLMVAAKRSAIPTFIVGHVTKDGSIAGPRVLEHMVDTVLYFEGDRGHAFRI
LRAVKNRFGSTNEIGVFEMKEGGLCEVRNPSEIFLSERPLGVSGSAVVTTIEGSRPLLVELQALVTPSSLGVPRRTTLGV
DANRLALLVAVLDKKVGLHMAGQDIFLNAAGGARVSEPAADLGMVAALASSHLDKVIDPQTVVVGEVGLAGEVRAITQPE
TRVREAAKLGFTRAVIPAGSLKQVTAVEGMEVIGVKSVEEALDRLL

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=24958 GMET_RS16425 WP_035468633.1 3686298..3687638(+) (radA) [Geobacter metallireducens GS-15]
ATGACATTGTATGTCTGCCAGAACTGCGGATACCAGTCGGCCAAGTGGCTCGGTAAGTGCCCCGACTGCTCCGCCTGGAA
CAGCCTCGTGGAAGAGGTGCGGGGCAAGGGGAAAGGCCCCTCCGCCCCCCTCTCCGGCGTGGCGCCGGTCCCCATCTGCG
ACGTGGCGGGGGAGGCGGAAGAACGGCTCCCCTGCGGCATATCCGAGTTCGACCGGGTCCTGGGCGGAGGGTTAGTGGCC
GGCTCCGTCATCCTTATCGGCGGCGATCCCGGCATCGGAAAATCAACCCTTCTCTTGCAAGTGATGGACCACTTGGCGCG
CACCGTCGGACCGGTCCTCTACGTTTCCGGCGAAGAGTCGGCCCGGCAGGCGAGGCTGAGGGGAGAGCGGCTCGGTATCC
GGGCAAAGGAGCTTCTCATCCTGGCCGAAACTGCCCTCGAAACAGTGCTGGCCCAGATCGGCGCCGTGGCCCCCCGGGCC
GTGGTCATCGACTCCATCCAGACCATGTACGCCCCGGGGCTCGAATCGGCCCCCGGAAGCGTGAGCCAGGTGCGGGAGTG
CGCGGGGCGCCTCATGGTGGCGGCGAAACGGAGCGCCATCCCCACCTTCATTGTAGGGCACGTCACCAAGGACGGCTCCA
TCGCCGGCCCCCGGGTCCTGGAGCACATGGTCGACACGGTCCTCTACTTCGAGGGGGACCGGGGGCACGCCTTCCGGATC
CTGCGGGCGGTCAAAAACCGCTTCGGCTCCACCAACGAGATCGGCGTTTTCGAGATGAAGGAGGGGGGACTCTGCGAGGT
CCGCAACCCCTCGGAAATATTCCTTTCGGAGCGCCCCCTGGGGGTGTCCGGCTCCGCCGTGGTCACCACCATCGAGGGAA
GCCGTCCGCTCCTGGTGGAGCTCCAGGCCCTGGTCACCCCTTCCTCCCTGGGGGTTCCCCGCCGCACCACCCTGGGGGTC
GACGCCAACCGTCTTGCCCTCCTGGTGGCCGTCCTCGACAAGAAGGTGGGACTCCACATGGCGGGGCAGGACATCTTCCT
GAATGCCGCCGGCGGGGCGAGGGTAAGCGAACCGGCCGCCGACCTCGGTATGGTGGCCGCCCTCGCCTCCAGCCATCTGG
ACAAGGTCATCGATCCCCAGACGGTGGTTGTGGGCGAGGTGGGACTGGCCGGAGAGGTGCGGGCCATAACCCAGCCGGAA
ACCCGGGTACGGGAGGCGGCCAAGCTCGGCTTTACCCGGGCCGTCATCCCCGCCGGCAGCCTCAAGCAGGTGACCGCCGT
GGAGGGGATGGAAGTAATCGGGGTCAAATCGGTTGAAGAGGCCCTGGACCGGCTCCTGTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(71-212)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(4-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

56.629

99.776

0.565
  radA Streptococcus pneumoniae Rx1

54.036

100

0.54
  radA Streptococcus pneumoniae D39

54.036

100

0.54
  radA Streptococcus pneumoniae R6

54.036

100

0.54
  radA Streptococcus pneumoniae TIGR4

54.036

100

0.54
  radA Streptococcus mitis SK321

54.036

100

0.54
  radA Streptococcus mitis NCTC 12261

53.812

100

0.538

Multiple sequence alignment