Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   APPSER1_RS06100 Genome accession   NZ_CP029003
Coordinates   1335380..1337188 (-) Length   602 a.a.
NCBI ID   WP_005597995.1    Uniprot ID   A0ABM6X3N5
Organism   Actinobacillus pleuropneumoniae serovar 1 str. 4074     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1330380..1342188
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  APPSER1_RS06075 (APPSER1_06075) nagZ 1330381..1331418 (+) 1038 WP_043993299.1 beta-N-acetylhexosaminidase -
  APPSER1_RS06080 (APPSER1_06080) rlmC 1331499..1332674 (+) 1176 WP_005597991.1 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC -
  APPSER1_RS06085 (APPSER1_06085) eno 1332882..1334192 (+) 1311 WP_005597992.1 phosphopyruvate hydratase -
  APPSER1_RS06090 (APPSER1_06090) - 1334268..1334897 (+) 630 WP_005597993.1 NUDIX hydrolase N-terminal domain-containing protein -
  APPSER1_RS06095 (APPSER1_06095) - 1334911..1335321 (+) 411 WP_005597994.1 DUF2251 domain-containing protein -
  APPSER1_RS06100 (APPSER1_06100) recQ 1335380..1337188 (-) 1809 WP_005597995.1 ATP-dependent DNA helicase RecQ Machinery gene
  APPSER1_RS06105 (APPSER1_06105) cyaY 1337273..1337578 (-) 306 WP_005597996.1 iron donor protein CyaY -
  APPSER1_RS11140 (APPSER1_06110) - 1337587..1338363 (-) 777 Protein_1193 glycosyltransferase family 25 protein -
  APPSER1_RS06120 (APPSER1_06120) tsaD 1338404..1339447 (-) 1044 WP_005598001.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  APPSER1_RS06125 (APPSER1_06125) - 1339539..1340315 (-) 777 WP_005598002.1 outer membrane protein assembly factor BamD -
  APPSER1_RS06130 (APPSER1_06130) rluD 1340468..1341445 (+) 978 WP_005598003.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -

Sequence

Protein


Download         Length: 602 a.a.        Molecular weight: 68459.42 Da        Isoelectric Point: 7.6556

>NTDB_id=249560 APPSER1_RS06100 WP_005597995.1 1335380..1337188(-) (recQ) [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
MQLSQTAAKDVLNNVFGYQSFRHGQQEVIDSVLAGRDCLVIMTTGGGKSLCYQVPALCLDGITLVISPLISLMKDQVDQL
LTNGIEAGFLNSTQTFEEQQLVEQKALSGQLKLLYLSPEKVMTQGFFHFISLCKISLIAVDEAHCVSQWGHDFRPEYTLL
GNLRDTFPNVPLMALTATADPTTRHDILQHLRLTDPHTYLGSFDRPNIRYTVQEKFKPVEQLAKFISKQQGKSGIVYCNS
RKKVEEITEKLASRKISVMGYHAGMSVQQRETVQNAFQRDNIQVVVATIAFGMGINKSNVRFVVHFDLPRSIESYYQETG
RAGRDDLPSEAVLFYDPADYAWLQKVLLEEPESEQRDIKQHKLQAIGAFAESQTCRRLVLLNYFGESRQEPCKNCDICLD
PPRKYDGTLDAQKVMSVIYRTGQTFGAHHVIGVLRGLNNQKIRQFNHDQLSVYGIGKEQSQDYWLSIIRQLIHLGLIRQN
IVNHSALQLTEEARPVLRSEKKLELAMPRLTFSATAYVQKQSSVRYDKDLFARLRFLRKQIADKENIPPYVVFNDATLQE
MAEFLPLSEVEMLDINGVGERKLERFGGAFLSLIREHCNNRQ

Nucleotide


Download         Length: 1809 bp        

>NTDB_id=249560 APPSER1_RS06100 WP_005597995.1 1335380..1337188(-) (recQ) [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
ATGCAATTATCTCAAACCGCCGCCAAAGACGTATTGAATAATGTCTTCGGTTATCAATCTTTTCGTCACGGACAACAAGA
AGTGATCGATTCGGTTCTGGCGGGTAGAGATTGTTTAGTCATTATGACCACCGGCGGCGGTAAGTCGCTTTGTTACCAAG
TACCGGCGCTTTGCTTAGACGGCATTACGCTAGTGATTTCTCCGCTGATTTCTTTGATGAAAGATCAGGTTGATCAGTTG
CTTACCAATGGTATCGAAGCCGGCTTTTTAAATTCCACGCAAACTTTTGAAGAACAACAGCTTGTCGAACAGAAAGCACT
TTCCGGTCAGTTGAAATTACTTTATCTCTCGCCGGAAAAAGTAATGACTCAAGGCTTTTTCCATTTTATTTCGTTATGCA
AAATTAGCCTGATTGCAGTCGATGAAGCGCATTGCGTTTCGCAATGGGGGCATGATTTCCGTCCGGAATACACTTTATTA
GGCAATTTGCGTGATACCTTTCCGAATGTGCCGCTGATGGCATTAACGGCAACGGCAGATCCTACGACTCGCCACGATAT
TCTGCAGCACCTGCGCTTAACCGATCCGCATACCTATTTAGGCAGTTTTGATCGCCCGAATATTCGCTATACGGTACAAG
AAAAATTTAAGCCAGTGGAACAGTTGGCAAAATTCATCAGTAAACAGCAGGGCAAGAGCGGTATCGTTTATTGCAATAGC
CGTAAAAAAGTGGAAGAAATTACCGAAAAATTGGCGTCACGTAAAATTTCAGTAATGGGTTACCACGCCGGTATGTCGGT
TCAGCAACGTGAAACGGTTCAAAATGCGTTTCAGCGAGATAATATTCAAGTTGTGGTGGCTACTATTGCTTTCGGGATGG
GGATTAATAAATCAAACGTGCGTTTTGTGGTGCATTTCGATTTGCCACGCAGTATCGAATCCTACTATCAAGAAACCGGG
CGTGCCGGACGTGATGATTTACCATCTGAAGCGGTGTTATTTTATGATCCCGCCGATTATGCGTGGTTACAGAAAGTATT
ATTGGAAGAGCCGGAAAGCGAACAGCGCGATATAAAGCAACATAAATTACAAGCCATCGGTGCTTTTGCCGAATCGCAAA
CCTGCCGCCGTTTAGTGCTATTGAATTATTTCGGCGAATCACGCCAAGAACCCTGTAAAAACTGTGATATTTGCTTAGAT
CCGCCTCGTAAATATGACGGTACGTTAGATGCGCAAAAAGTGATGTCGGTTATTTACCGTACCGGTCAAACTTTTGGCGC
ACACCATGTGATTGGCGTATTACGAGGGTTAAATAACCAAAAAATTCGCCAGTTTAATCATGATCAGCTTTCGGTGTACG
GTATCGGTAAAGAGCAGAGCCAAGATTATTGGTTAAGTATTATTCGTCAATTAATTCATTTGGGTTTAATTCGTCAAAAT
ATCGTGAACCATTCGGCATTACAGCTGACGGAAGAAGCTCGTCCGGTGCTGCGTTCGGAGAAAAAACTTGAATTGGCAAT
GCCTCGCTTAACCTTCTCGGCAACGGCTTATGTACAGAAACAGAGTTCGGTTCGTTACGATAAAGACTTATTTGCTCGCC
TGCGTTTTCTACGTAAACAAATTGCCGATAAAGAAAATATCCCGCCTTATGTGGTATTCAACGATGCGACTTTGCAGGAA
ATGGCGGAATTTTTACCGCTTAGCGAAGTGGAAATGTTGGATATTAATGGGGTCGGAGAACGTAAACTGGAACGTTTCGG
CGGTGCGTTTTTAAGCCTGATTCGAGAGCATTGTAATAATCGCCAATAA

Domains

Predicted by InterProScan.

HRDC domain (HRDC)

(528-594)

RecQ zinc-binding (RecQ_Zn_bind)

(339-399)

RQC domain (RQC)

(401-509)

Helicase conserved C-terminal domain (Helicase_C)

(220-324)

DEAD/DEAH box helicase (DEAD)

(24-180)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

39.43

99.003

0.39

Multiple sequence alignment