Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   DBX28_RS23235 Genome accession   NZ_CP028959
Coordinates   4897477..4898919 (-) Length   480 a.a.
NCBI ID   WP_010793818.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain IMP66     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4892477..4903919
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DBX28_RS23205 (DBX28_23135) - 4892803..4893918 (+) 1116 WP_003101181.1 glycosyltransferase family 4 protein -
  DBX28_RS23210 (DBX28_23140) - 4893911..4894672 (+) 762 WP_016253848.1 DUF2334 domain-containing protein -
  DBX28_RS23215 (DBX28_23145) - 4894669..4895670 (+) 1002 WP_003120851.1 YbhN family protein -
  DBX28_RS23220 (DBX28_23150) - 4895645..4895857 (-) 213 WP_016253849.1 hypothetical protein -
  DBX28_RS23225 (DBX28_23155) purU 4895907..4896758 (-) 852 WP_003101174.1 formyltetrahydrofolate deformylase -
  DBX28_RS23230 (DBX28_23160) mvaT 4897018..4897392 (+) 375 WP_003093888.1 histone-like nucleoid-structuring protein MvaT -
  DBX28_RS23235 (DBX28_23165) sbcB 4897477..4898919 (-) 1443 WP_010793818.1 exodeoxyribonuclease I Machinery gene
  DBX28_RS23240 (DBX28_23170) - 4899144..4899881 (+) 738 WP_003101171.1 hypothetical protein -
  DBX28_RS23245 (DBX28_23175) - 4899919..4900716 (+) 798 WP_003123273.1 RDD family protein -
  DBX28_RS23250 (DBX28_23180) - 4900713..4901693 (+) 981 WP_003093893.1 stage II sporulation protein M -
  DBX28_RS23255 (DBX28_23185) - 4901680..4903251 (+) 1572 WP_034020491.1 DUF4129 domain-containing protein -

Sequence

Protein


Download         Length: 480 a.a.        Molecular weight: 55421.65 Da        Isoelectric Point: 5.4134

>NTDB_id=249486 DBX28_RS23235 WP_010793818.1 4897477..4898919(-) (sbcB) [Pseudomonas aeruginosa strain IMP66]
MTVNASIFWYDYETTGIDPRRDRPLQIAGIRTDEALNEIGEPMNLYCRPSDDILPHPMACLITGITPQRLAERGLSEADF
MTRVHAQLAQPATCVAGYNSLRFDDEVTRYSLYRNFFDPYAREWQGGNSRWDLIDMVRTAYALRPEGIQWPQLDGRLSLK
LEMLTAANGLEHGQAHDALSDVRATIALARLIRQRQPRLYDYLYQLRSKHKVLDQVRLLQPLVHVSGRFSAERHFLSVAL
PLAWHPRNRNALIVCDLCADPAPLLELSAEDLRRRLYTRRDELAEGELPVPLKQIQVNRCPVVAPLSVLRAEDRQRTGIE
LDECQQKAELLRQHQTVWADKLTALYGEESFSASDDPEQQLYDGFIGDRDRRLCEQLRLAEPEQLAKEQWPFDDARLQEL
FFRYRARNFPETLNVAERQQWESFCRNRLSHEEYGAPNTLPAFEAALEACRQEQGGTLPAVLAAWRDYAAELRQRYSLET

Nucleotide


Download         Length: 1443 bp        

>NTDB_id=249486 DBX28_RS23235 WP_010793818.1 4897477..4898919(-) (sbcB) [Pseudomonas aeruginosa strain IMP66]
ATGACCGTGAACGCGAGTATTTTTTGGTACGACTACGAAACCACCGGCATCGACCCTCGCCGCGACCGGCCGTTGCAGAT
CGCCGGGATCCGCACGGACGAGGCGCTGAACGAGATCGGCGAGCCGATGAACCTGTATTGCCGTCCCAGCGACGATATCC
TGCCCCACCCTATGGCTTGCCTGATCACCGGCATCACTCCCCAGCGGCTGGCCGAGCGGGGGCTGTCCGAGGCCGACTTC
ATGACCCGGGTACACGCCCAGCTGGCGCAGCCGGCGACCTGCGTGGCCGGCTACAACTCCCTGCGCTTCGACGACGAAGT
GACGCGCTACAGCCTGTACCGCAACTTCTTCGATCCCTACGCCCGCGAGTGGCAAGGCGGCAATAGCCGCTGGGACCTGA
TCGACATGGTCCGTACCGCCTATGCCCTGCGCCCGGAGGGCATCCAGTGGCCGCAGCTGGACGGCCGGCTGTCGCTGAAG
CTGGAAATGCTCACCGCGGCGAACGGCCTGGAGCATGGGCAGGCCCACGACGCGCTTTCCGATGTCCGCGCCACCATTGC
CCTGGCCCGCCTGATCCGTCAGCGCCAGCCGCGCCTGTACGATTACCTCTACCAGTTGCGCAGCAAGCACAAGGTGCTCG
ACCAGGTGCGCCTGCTGCAGCCGCTGGTGCATGTCTCCGGACGCTTTTCCGCGGAGCGCCATTTCCTCTCGGTGGCCCTG
CCGCTGGCCTGGCACCCGCGCAACCGCAATGCTCTGATCGTCTGCGACCTCTGCGCCGATCCCGCGCCGCTGCTGGAGTT
GTCGGCCGAGGACTTGCGCAGGCGCCTGTATACCCGTCGCGACGAACTGGCCGAGGGCGAGTTGCCGGTGCCGCTGAAGC
AGATCCAGGTCAACCGTTGCCCGGTGGTGGCGCCGCTGTCGGTATTGCGCGCCGAGGATCGCCAGCGAACCGGCATCGAA
CTCGATGAGTGCCAGCAAAAAGCCGAGCTGTTGCGCCAGCATCAAACCGTCTGGGCGGACAAACTGACAGCGCTATATGG
CGAAGAAAGTTTCTCCGCCAGCGACGACCCCGAGCAACAGTTGTATGACGGATTTATTGGCGATCGGGATCGACGCCTTT
GTGAACAGCTGCGCCTTGCCGAACCGGAGCAATTGGCCAAAGAACAATGGCCCTTCGACGATGCCCGTTTGCAGGAGTTG
TTCTTCCGCTATCGTGCGCGAAATTTCCCGGAAACTTTAAATGTGGCCGAGCGCCAACAATGGGAAAGCTTCTGCCGCAA
TCGTTTGTCCCATGAAGAATACGGCGCACCGAATACTTTGCCGGCCTTCGAGGCGGCGCTGGAGGCTTGTCGGCAAGAGC
AGGGCGGCACATTGCCGGCGGTACTTGCGGCCTGGCGCGATTACGCCGCGGAACTGCGTCAACGCTATTCGCTGGAGACT
TGA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(207-470)

Exonuclease (RNase_T)

(9-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

49.412

88.542

0.438