Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   CPY53_RS15920 Genome accession   NZ_CP023711
Coordinates   3669030..3669983 (+) Length   317 a.a.
NCBI ID   WP_031462261.1    Uniprot ID   -
Organism   Paenibacillus polymyxa strain C12     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3664030..3674983
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CPY53_RS15905 (CPY53_15940) - 3666324..3667001 (-) 678 WP_017425557.1 ABC transporter ATP-binding protein -
  CPY53_RS15910 (CPY53_15945) - 3667109..3668026 (-) 918 WP_031462263.1 HAMP domain-containing sensor histidine kinase -
  CPY53_RS15915 (CPY53_15950) - 3668027..3668705 (-) 679 Protein_3107 response regulator transcription factor -
  CPY53_RS15920 (CPY53_15955) ceuB 3669030..3669983 (+) 954 WP_031462261.1 ABC transporter permease Machinery gene
  CPY53_RS15925 (CPY53_15960) - 3669973..3670923 (+) 951 WP_017425553.1 iron chelate uptake ABC transporter family permease subunit -
  CPY53_RS15930 (CPY53_15965) - 3670917..3671675 (+) 759 WP_242210438.1 ABC transporter ATP-binding protein -
  CPY53_RS15935 (CPY53_15970) - 3671688..3672668 (+) 981 WP_102997615.1 siderophore ABC transporter substrate-binding protein -
  CPY53_RS15940 (CPY53_15975) - 3672702..3673445 (+) 744 WP_242210439.1 alpha/beta hydrolase-fold protein -
  CPY53_RS15945 (CPY53_15980) - 3673604..3674515 (+) 912 WP_242210440.1 aldo/keto reductase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34676.62 Da        Isoelectric Point: 9.9012

>NTDB_id=249477 CPY53_RS15920 WP_031462261.1 3669030..3669983(+) (ceuB) [Paenibacillus polymyxa strain C12]
MKLRYLILAFIVLAFASVFIGVHDVTPLDLFHLSNDQAQVLLISRFPRLVSIIIAGASMSICGLIMQQLTRNRFVSPTTA
GTMDAARLGVLMAIMVFGAAGFWTKMLTAFGFALGGTLVFMKILDKIRFKDPVFIPLVGLMFGGILNSVTTFFAYKYNLI
QGISSWMQGDFSLIMSGRYEMLYLSVPLVALAYIYANRFTIAGMGEDFAANLGVHYKRTVNVGLVIVALGSSVVILTVGT
IPFLGLVVPNLVSMYMGDNLKKSLAHTAILGAIFVLFCDILGRVIIYPYEISVGLTVGVIGSALFLYLLLRRRAYES

Nucleotide


Download         Length: 954 bp        

>NTDB_id=249477 CPY53_RS15920 WP_031462261.1 3669030..3669983(+) (ceuB) [Paenibacillus polymyxa strain C12]
ATGAAATTGCGCTATTTAATACTGGCTTTTATCGTATTGGCCTTCGCCTCGGTGTTTATCGGTGTGCATGATGTAACTCC
ACTTGATTTGTTCCACTTATCCAACGATCAAGCGCAGGTGCTCCTGATTAGCAGATTCCCACGTTTGGTCAGCATCATTA
TCGCAGGGGCGAGTATGAGTATCTGCGGGCTCATCATGCAGCAGCTTACTCGGAACCGGTTTGTTTCGCCGACCACCGCA
GGCACGATGGATGCGGCACGATTAGGTGTGCTGATGGCTATTATGGTGTTTGGAGCGGCAGGATTTTGGACGAAGATGCT
GACGGCTTTTGGATTTGCTCTAGGGGGAACCCTGGTTTTCATGAAGATACTGGATAAAATCCGTTTTAAGGACCCGGTAT
TTATCCCGCTTGTCGGTTTGATGTTTGGAGGCATTTTAAATTCGGTGACGACTTTTTTTGCTTACAAATACAATCTGATT
CAGGGCATTTCTTCGTGGATGCAGGGGGATTTTTCTCTCATTATGAGTGGTCGCTACGAAATGCTGTATCTCAGTGTTCC
TTTGGTCGCGTTGGCGTACATATATGCGAATCGTTTTACAATTGCAGGCATGGGTGAGGATTTTGCGGCTAATTTGGGCG
TACATTACAAGCGCACCGTCAATGTGGGTTTGGTGATCGTGGCTTTGGGGTCCTCTGTTGTCATCTTAACCGTCGGGACG
ATTCCCTTTTTGGGGCTGGTTGTACCCAATCTGGTCAGTATGTACATGGGGGATAATCTGAAAAAAAGCCTAGCACATAC
AGCGATCTTGGGTGCCATTTTTGTGCTGTTTTGCGATATTTTGGGACGGGTGATCATTTACCCATATGAGATTTCTGTAG
GGCTTACGGTTGGTGTAATCGGGAGCGCGTTGTTCTTGTATTTGCTGCTGAGGAGAAGGGCTTATGAATCCTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

50.159

99.369

0.498

Multiple sequence alignment