Detailed information NTG0249444

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: DBX28_RS07060
• Genome accession: NZ_CP028959
• Coordinates: 1475967..1476971 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain IMP66
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1470967..1481971

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DBX28_RS07030 (DBX28_07010)	fghA	1471059..1471910 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
DBX28_RS07035 (DBX28_07015)	ispF	1471981..1472454 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
DBX28_RS07040 (DBX28_07020)	truD	1472451..1473518 (+)	1068	WP_023115122.1	tRNA pseudouridine(13) synthase TruD	-
DBX28_RS07045 (DBX28_07025)	surE	1473506..1474255 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
DBX28_RS07050 (DBX28_07030)	-	1474288..1474923 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
DBX28_RS07055 (DBX28_07035)	-	1474969..1475862 (+)	894	WP_003115226.1	peptidoglycan DD-metalloendopeptidase family protein	-
DBX28_RS07060 (DBX28_07040)	rpoS	1475967..1476971 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
DBX28_RS07065 (DBX28_07045)	fdxA	1477398..1477721 (-)	324	WP_003092272.1	ferredoxin FdxA	-
DBX28_RS07070 (DBX28_07050)	mutS	1477788..1480355 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
DBX28_RS07080 (DBX28_07060)	-	1480481..1481488 (-)	1008	WP_003092265.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=249444 DBX28_RS07060 WP_003113871.1 1475967..1476971(+) (rpoS) [Pseudomonas aeruginosa strain IMP66]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=249444 DBX28_RS07060 WP_003113871.1 1475967..1476971(+) (rpoS) [Pseudomonas aeruginosa strain IMP66]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653